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BaseInfo

ncRNA ID	novel_osa_miR1556
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:720312-720457 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	23
Mature sequence(if miRNA)	124 - CCUUCGUUUCAGGUUAUAAGACU - 146
Stem-loop(if miRNA)	--           G                                    G     A     C     C   C   CCUUCGUUUCA GUUAUAAGACUUUCUAGCAUUGUCCACAUUCAUAUA AUGUU AUGAA CUAGA ACA A   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||   GGAGGCAAAGU UAAUAUUCUGAAAGAUCGUAACGGGUGUAAGUAUAU UACAA UACUU GAUCU UGU U AA           A                                    A     C     A     A   A
Stem-loop sequence	CCUUCGUUUCAGGUUAUAAGACUUUCUAGCAUUGUCCACAUUCAUAUAGAUGUUAAUGAACCUAGACACACAUAUGUAUCUAGAUUCAUCAACAUAUAUAUGAAUGUGGGCAAUGCUAGAAAGUCUUAUAAUAUGAAACGGAGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107726.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   |||||||||||||||||||=||| targets:422   AGUCUUAUAACCUGAAACGGAGG   444 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-132-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015794062.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   |||||||||||||||||||=||| targets:1020   AGUCUUAUAACCUGAAACGGAGG   1042 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor AIG1 (LOC4345836), mRNA	transcription factor AIG1(LOC4345836)	coding protein	psRNATarget
XM_015764678.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   |||||||||||||||||||=||| targets:1703   AGUCUUAUAACCUGAAACGGAGG   1725 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
AK120530.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   |||||||||||||||||||=||| targets:1909   AGUCUUAUAACCUGAAACGGAGG   1931 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013127H10, full insert sequence	NA	coding protein	psRNATarget
AK120847.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ||||||=||||||||||||=||| targets:616   AGUCUUGUAACCUGAAACGGAGG   638 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023023A10, full insert sequence	NA	coding protein	psRNATarget
AK072372.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ||||||=||||||||||||=||| targets:771   AGUCUUGUAACCUGAAACGGAGG   793 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023068F06, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   *||||||||||||||||||=||| targets:1420   CGUCUUAUAACCUGAAACGGAGG   1442 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
AK288313.1	ncRNA:23   UCAGAAUAUUGGACUUUGC-UUCC   1   *||||||||||||||||||-|||| targets:1050   CGUCUUAUAACCUGAAACGGAAGG   1073 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   **|||||||||||||||||=||| targets:342   CAUCUUAUAACCUGAAACGGAGG   364 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   **|||||||||||||||||=||| targets:598   UAUCUUAUAACCUGAAACGGAGG   620 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK100473.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   **|||||||||||||||||=||| targets:1360   CUUCUUAUAACCUGAAACGGAGG   1382 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence	NA	coding protein	psRNATarget
AK288358.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   *||||||||||||||||||*||| targets:1095   UGUCUUAUAACCUGAAACGUAGG   1117 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK288811.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   *||*|||||||||||||||=||| targets:2077   CGUAUUAUAACCUGAAACGGAGG   2099 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK071758.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ***||||||||||||||||=||| targets:1142   CCCCUUAUAACCUGAAACGGAGG   1164 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence	NA	coding protein	psRNATarget
XM_015792379.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ***||||||||||||||||=||| targets:1154   CCCCUUAUAACCUGAAACGGAGG   1176 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA	uncharacterized protein At4g14100(LOC4342613)	coding protein	psRNATarget
XM_015766543.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ||||||||*||||||||||*||| targets:440   AGUCUUAUCACCUGAAACGCAGG   462 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein INVOLVED IN DE NOVO 2 (LOC4325982), mRNA	protein INVOLVED IN DE NOVO 2(LOC4325982)	coding protein	psRNATarget
AK062436.1	ncRNA:23   UCAGAAUAUUGGACUUUGCUUCC   1   ***||*|||||||||||||=||| targets:134   CCACUGAUAACCUGAAACGGAGG   156 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-103-A05, full insert sequence	NA	coding protein	psRNATarget