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BaseInfo

ncRNA ID	novel_osa_miR1546
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:3854363-3854508 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	123 - AUGGAUUCCGCCUGUAAACUGCGA - 146
Stem-loop(if miRNA)	--       CC  C      C            UUAUUA          AUU      -----      ----     UA   AUGGAUU  GC UGUAAA UGCGAGACGAAU      AGCCUAAUUA   CGUCAU     UAGCAA    AUGUU  C   |||||||  || |||||| ||||||||||||      ||||||||||   ||||||     ||||||    |||||   UGUCUAA  CG ACAUUU ACGCUCUGCUUA      UCGGAUUAAU   GCGGUA     AUUGUU    UACGA  U CG       --  U      A            UAAAAC          ---      CUAAA      ACAC     UG
Stem-loop sequence	AUGGAUUCCGCCUGUAAACUGCGAGACGAAUUUAUUAAGCCUAAUUAAUUCGUCAUUAGCAAAUGUUUACUGUAGCAUCACAUUGUUAAAAUCAUGGCGUAAUUAGGCUCAAAAUAUUCGUCUCGCAAUUUACAUGCAAUCUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGCGUCAAAUGUCCGCCUUAGGUA   1   |||||||||||||||||||||=|| targets:808   UCGCAGUUUACAGGCGGAAUCUAU   831 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGCGUCAAAUGUCCGCCUUAGGUA   1   |||||||||||||||||||||=|| targets:448   UCGCAGUUUACAGGCGGAAUCUAU   471 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGCGUCAAAUGUCCGCCUUAGGUA   1   |||||||||||||||||||||=|| targets:2051   UCGCAGUUUACAGGCGGAAUCUAU   2074 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget