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BaseInfo

ncRNA ID	novel_osa_miR1544
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:6505778-6505843 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2857731
Length	24
Mature sequence(if miRNA)	1 - AAUAACCGGGACUAAAGAUGGCUC - 24
Stem-loop(if miRNA)	--AA                          ACG     UAACCGGGACUAAAGAUGGCUCAGCC   U     ||||||||||||||||||||||||||     GUUGGCCCUGAUUUCUACCGAGUCGG   G UGUG                          CCG
Stem-loop sequence	AAUAACCGGGACUAAAGAUGGCUCAGCCACGUGGCCGGCUGAGCCAUCUUUAGUCCCGGUUGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288424.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||*|=||=|||||||||||||=|| targets:2285   GAUCUAUUUUUAGUCCCGGUUGUU   2308 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   *|*=*|||||||||||||||||*| targets:2377   AAAUGAUCUUUAGUCCCGGUUAGU   2400 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   *||*=||||||||||||||||=|| targets:2234   AAGAUAUCUUUAGUCCCGGUUGUU   2257 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||*||*|=|||||||||||||||| targets:2402   GAUCCUUUUUUAGUCCCGGUUAUU   2425 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   **|*=||||||||||||||||=|| targets:1418   UUGGUAUCUUUAGUCCCGGUUGUU   1441 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   **|*=||||||||||||||||||| targets:1871   CCGGUAUCUUUAGUCCCGGUUAUU   1894 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||-=|||||||||||||||||*|| targets:37   GA-UCAUCUUUAGUCCCGGUUCUU   59 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||-=|||||||||||||||||*|| targets:1438   GA-UCAUCUUUAGUCCCGGUUCUU   1460 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||-=|||||||||||||||||*|| targets:1444   GA-UCAUCUUUAGUCCCGGUUCUU   1466 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288463.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   ||***||||||||||||||||||| targets:639   GAUGGAUCUUUAGUCCCGGUUAUU   662 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   *|*=*|||||||||||||||||** targets:244   AAAUGAUCUUUAGUCCCGGUUAAA   267 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK105552.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   *||--|||||||||||||||||** targets:1271   UAG--AUCUUUAGUCCCGGUUAGC   1292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   |**=*|||||||||||||||||*| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	1.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   |**=*|||||||||||||||||*| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	1.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   CUCGGUAGAAAUCAGGGCCAAUAA   1   |**=*|||||||||||||||||*| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	1.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget