| ncRNA ID | ath-miR5020a |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:6791301-6791470 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 101 - UGGAAGAAGGUGAGACUUGCA - 121 |
| Stem-loop(if miRNA) |
AA - UGAGA AUUA G GGC AU A - -- AAUCA AAAUA GCAA AUCUAAG GAUA U AGUGAU CAUGGC GGAAGAAGGUG GACUUGCA UGA AUCGUG A ||||| |||| ||||||| |||| | |||||| |||||| ||||||||||| |||||||| ||| |||||| UUUAU UGUU UAGAUUC UUAU A UCACUA GUACCG CCUUUUUCCAU CUGAACGU ACU UAGUAC A CA C -UAAA ---G G AUA AU G C AU CUCCA |
| Stem-loop sequence | AAAUAAAGCAAAUCUAAGUGAGAGAUAAUUAUGAGUGAUGGCCAUGGCAUGGAAGAAGGUGAGACUUGCAUGAAUCGUGAAUCAAAACCUCCAUGAUUAUCACUGCAAGUCGUACCUUUUUCCUAGCCAUGAUAAUCACUGAGUAUUAAAUCUUAGAUCUUGUACUAUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY085425.1 |
|
3.0 | Arabidopsis thaliana clone 151041 mRNA, complete sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |
| 2 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |