ncRNA ID | novel_osa_miR1535 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:8048196-8048323 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000 |
Length | 21 |
Mature sequence(if miRNA) | 108 - CAGACGGGAUCUCGACCUCGA - 128 |
Stem-loop(if miRNA) |
--   A     U               CA         A    U     C  U  C     UCU   CAG CGGGA CUCGACCUCGACAUC  UAUCCCACU GAAC UGCUA CG UG CACUA   U   ||| ||||| |||||||||||||||  ||||||||| |||| ||||| || || |||||   GUC GCCCU GAGCUGGAGCUGUAG  AUAGGGUGA CUUG GCGAU GU AC GUGAU   A UC   G     U               UC         G    C     A  U  A     UGU |
Stem-loop sequence | CAGACGGGAUCUCGACCUCGACAUCCAUAUCCCACUAGAACUUGCUACCGUUGCCACUAUCUUAUGUUAGUGACAUUGAUAGCGCGUUCGAGUGGGAUACUGAUGUCGAGGUCGAGUUCCCGGCUGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015782803.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278430 (LOC107278430), mRNA | uncharacterized LOC107278430(LOC107278430) | coding protein | psRNATarget |