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BaseInfo

ncRNA ID novel_osa_miR1535
Species Oryza sativa
Class miRNA
Genome position Chr12:8048196-8048323 [-]
Reference genome IRGSP-1.0
Source SRR1743000
Length 21
Mature sequence(if miRNA) 108 - CAGACGGGAUCUCGACCUCGA - 128
Stem-loop(if miRNA) --   A     U               CA         A    U     C  U  C     UCU
  CAG CGGGA CUCGACCUCGACAUC  UAUCCCACU GAAC UGCUA CG UG CACUA   U
  ||| ||||| |||||||||||||||  ||||||||| |||| ||||| || || |||||
  GUC GCCCU GAGCUGGAGCUGUAG  AUAGGGUGA CUUG GCGAU GU AC GUGAU   A
UC   G     U               UC         G    C     A  U  A     UGU
Stem-loop sequence CAGACGGGAUCUCGACCUCGACAUCCAUAUCCCACUAGAACUUGCUACCGUUGCCACUAUCUUAUGUUAGUGACAUUGAUAGCGCGUUCGAGUGGGAUACUGAUGUCGAGGUCGAGUUCCCGGCUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015782803.1
ncRNA:21   AGCUCCAGCUCUAGGGCAGAC   1
  *=|=||**|||||||||||||
targets:267   GUGGGGCAGAGAUCCCGUCUG   287

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278430 (LOC107278430), mRNA uncharacterized LOC107278430(LOC107278430) coding protein psRNATarget