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BaseInfo

ncRNA ID	novel_osa_miR1531
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6803038-6803147 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1849777;SRR1738216;SRR1738227;SRR1738241
Length	23
Mature sequence(if miRNA)	88 - CACGAGAUGAAUCUUUUGAGCCU - 110
Stem-loop(if miRNA)	-- A                              A G      C   A   CUAC   C CGAGAUGAAUCUUUUGAGCCUAAUUAGUCC U AUUAGC AUA GUG    A   | |||||||||||||||||||||||||||||| | |||||| ||| |||    G   G GCUCUGCUUAGAAAAUUCGGAUUAAUUAGG G UAAUCG UAU CAU    U UG C                              C G      -   A   CUAA
Stem-loop sequence	CACGAGAUGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGCUACAGUAAUCUACAUAUGCUAAUGGCGGAUUAAUUAGGCUUAAAAGAUUCGUCUCGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121199.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||||||||||||=||||||| targets:1468   AGGCUCAAAAGAUUCGUCUCGUG   1490 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=|||||||||=||||||| targets:806   AGGCUUAAAAGAUUCGUCUCGUG   828 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK062636.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=|||||||||=||||||| targets:804   AGGCUUAAAAGAUUCGUCUCGUG   826 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015790304.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=|||||||||=||||||| targets:812   AGGCUUAAAAGAUUCGUCUCGUG   834 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA	RING-H2 finger protein ATL45(LOC4344335)	coding protein	psRNATarget
AK072341.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=||||||||||||||||* targets:2389   AGGCUUAAAAGAUUCAUCUCGUA   2411 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||||||||||||||||||*| targets:612   AGGCUCAAAAGAUUCAUCUCGCG   634 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
AK241322.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||||||||||||||||||** targets:2142   AGGCUCAAAAGAUUCAUCUCGCU   2164 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence	NA	coding protein	psRNATarget
XM_015757506.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||||||||||||||||||** targets:2135   AGGCUCAAAAGAUUCAUCUCGCU   2157 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA	uncharacterized LOC9268466(LOC9268466)	coding protein	psRNATarget
HI403831.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=||*|||||||||||||* targets:91   AGGCUUAACAGAUUCAUCUCGUA   113 Target Full Sequence	3.0	Sequence 1956 from Patent EP2074227	NA	coding protein	psRNATarget
JB164292.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=||*|||||||||||||* targets:91   AGGCUUAACAGAUUCAUCUCGUA   113 Target Full Sequence	3.0	Sequence 1956 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235961.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   |||||=||*|||||||||||||* targets:91   AGGCUUAACAGAUUCAUCUCGUA   113 Target Full Sequence	3.0	Sequence 1956 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015778499.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   ||*||=|||||||||||||||*| targets:24   AGACUUAAAAGAUUCAUCUCGCG   46 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
AK099773.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   ||*||=|||||||||||||||*| targets:721   AGACUUAAAAGAUUCAUCUCGCG   743 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   ||*||=|||||||||||||||*| targets:791   AGACUUAAAAGAUUCAUCUCGCG   813 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
AJ535213.1	ncRNA:23   UCC--GAGUUUUCUAAGUAGAGCAC   1   |||--||||*|||||||*||||||| targets:2818   AGGUUCUCACAAGAUUCUUCUCGUG   2842 Target Full Sequence	2.5	Oryza sativa mRNA for SMC6 protein	NA	coding protein	psRNATarget
AK288737.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGCAC   1   ||*|||||*||||||||||||*| targets:1470   AGACUCAAUAGAUUCAUCUCGCG   1492 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget