Search result

BaseInfo

ncRNA ID	novel_osa_miR1522
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:7638937-7639019 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014;SRR4407779;SRR4407955
Length	24
Mature sequence(if miRNA)	1 - AAGAAUCUAGUAGUGGAUGGGACA - 24
Stem-loop(if miRNA)	--            G           -CA    -   A UAC   AAGAAUCUAGUA UGGAUGGGACA   UCCU AGU C   G   |||||||||||| |||||||||||   |||| ||| |   A   UUCUUAGAUCAU ACCUACCCUGU   GGGA UCA G   A UA            G           AUC    G   A UUU
Stem-loop sequence	AAGAAUCUAGUAGUGGAUGGGACACAUCCUAGUACUACGAAUUUGAACUGAGGGCUAUGUCCCAUCCAGUACUAGAUUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781706.1	ncRNA:24   ACAGGGUAGGUGAUGAUCUAAGAA   1   ||||=*|||||*|||||||||||| targets:3186   UGUCUAAUCCAGUACUAGAUUCUU   3209 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270831 (LOC9270831), transcript variant X2, mRNA	uncharacterized LOC9270831(LOC9270831)	coding protein	psRNATarget
XM_015781707.1	ncRNA:24   ACAGGGUAGGUGAUGAUCUAAGAA   1   ||||=*|||||*|||||||||||| targets:3187   UGUCUAAUCCAGUACUAGAUUCUU   3210 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270831 (LOC9270831), transcript variant X3, mRNA	uncharacterized LOC9270831(LOC9270831)	coding protein	psRNATarget
XM_015781705.1	ncRNA:24   ACAGGGUAGGUGAUGAUCUAAGAA   1   ||||=*|||||*|||||||||||| targets:3189   UGUCUAAUCCAGUACUAGAUUCUU   3212 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270831 (LOC9270831), transcript variant X1, mRNA	uncharacterized LOC9270831(LOC9270831)	coding protein	psRNATarget
XM_015781708.1	ncRNA:24   ACAGGGUAGGUGAUGAUCUAAGAA   1   ||||=*|||||*|||||||||||| targets:3225   UGUCUAAUCCAGUACUAGAUUCUU   3248 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270831 (LOC9270831), transcript variant X4, mRNA	uncharacterized LOC9270831(LOC9270831)	coding protein	psRNATarget