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BaseInfo

ncRNA ID	novel_osa_miR1520
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13416942-13417004 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	1 - GUUAGUGGAUGAUAAUGUGGCAUC - 24
Stem-loop(if miRNA)	--      C      A   G   -AU    AU   UGCCAU UUGUUA UUA UGG   GAUG  G   |||||| |||||| ||| |||   ||||   ACGGUG AAUAGU GGU AUU   CUAC  U CU      U      A   G   GUU    GG
Stem-loop sequence	UGCCAUCUUGUUAAUUAGUGGAUGAUGAUGUGGCAUCUUGUUAGUGGAUGAUAAUGUGGCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288638.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||| targets:1098   GAUGCCACAUCAUCAUCCACUAAC   1121 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK288638.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||| targets:1154   GAUGCCACAUCAUCAUCCACUAAC   1177 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK288638.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||= targets:1124   GAUGCCACAUCAUCAUCCACUAAU   1147 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||| targets:2957   GAUGCCACAUCAUCAUCCACUAAC   2980 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||= targets:2927   GAUGCCACAUCAUCAUCCACUAAU   2950 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   |||*||||||*||||||||||||| targets:2901   GAUACCACAUCAUCAUCCACUAAC   2924 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||| targets:2956   GAUGCCACAUCAUCAUCCACUAAC   2979 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||||||||*||||||||||||= targets:2926   GAUGCCACAUCAUCAUCCACUAAU   2949 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   |||*||||||*||||||||||||| targets:2900   GAUACCACAUCAUCAUCCACUAAC   2923 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
CT837613.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||=|||||*||||||||||||| targets:1356   GAUGUCACAUCAUCAUCCACUAAC   1379 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA213H04, full insert sequence	NA	coding protein	psRNATarget
AK288324.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   *|||||||||*||||||||||||| targets:826   AAUGCCACAUCAUCAUCCACUAAC   849 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090022F09, full insert sequence	NA	coding protein	psRNATarget
AK242856.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   ||||=|||||*||||||||||||= targets:502   GAUGUCACAUCAUCAUCCACUAAU   525 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090073K21, full insert sequence	NA	coding protein	psRNATarget
AK242856.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   |||*||||||*||||||||||||| targets:476   GAUACCACAUCAUCAUCCACUAAC   499 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090073K21, full insert sequence	NA	coding protein	psRNATarget
AK242856.1	ncRNA:24   CUACGGUGUAAUAGUAGGUGAUUG   1   |||*||||||*||||||||||||| targets:532   GAUACCACAUCAUCAUCCACUAAC   555 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090073K21, full insert sequence	NA	coding protein	psRNATarget