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BaseInfo

ncRNA ID	novel_osa_miR1519
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8419277-8419452 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	23
Mature sequence(if miRNA)	1 - ACUUUUUAAUAAACGUUUGACCU - 23
Stem-loop(if miRNA)	--          A           U           AAA   AA          U   -CAUU     U   UG  A     UUUAU      ACUUUUUAAU AACGUUUGACC UUCGUUUUAUU   AAA  UUUUAUGUAA UAU     UAUUU UAU  UG CUUGA     CAUC   |||||||||| ||||||||||| |||||||||||   |||  |||||||||| |||     ||||| |||  || |||||     |||A   UGAAAAAUUG UUGCAAACUGG AAGCAGAAUAA   UUU  AAAAUACGUU AUG     AUGAA AUA  AC GAAUU     GUAA AC          G           U           --G   AA          U   UUUUU     U   GU  -     -UCUU
Stem-loop sequence	ACUUUUUAAUAAACGUUUGACCUUUCGUUUUAUUAAAAAAAAUUUUAUGUAAUUAUCAUUUAUUUUUAUUGUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUGAUAUAAGUAUUUUUGUAUUUGCAUAAAAAAUUUGAAUAAGACGAAUGGUCAAACGUUGGUUAAAAAGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236237.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *|||||||||||*|||||||||| targets:148   UGGUCAAACGUUGAUUAAAAAGU   170 Target Full Sequence	1.5	Sequence 2232 from Patent EP2985353	NA	coding protein	psRNATarget
HI404107.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *|||||||||||*|||||||||| targets:148   UGGUCAAACGUUGAUUAAAAAGU   170 Target Full Sequence	1.5	Sequence 2232 from Patent EP2074227	NA	coding protein	psRNATarget
JB164568.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *|||||||||||*|||||||||| targets:148   UGGUCAAACGUUGAUUAAAAAGU   170 Target Full Sequence	1.5	Sequence 2232 from Patent EP2559767	NA	coding protein	psRNATarget
CT830705.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *|||||||||||*|||||||||| targets:382   UGGUCAAACGUUGAUUAAAAAGU   404 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence	NA	coding protein	psRNATarget
AK068361.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   **|||||||||||||*||||||| targets:743   UAGUCAAACGUUUAUCAAAAAGU   765 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
JB163965.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *||||||||*||*|||||||||| targets:172   UGGUCAAACAUUGAUUAAAAAGU   194 Target Full Sequence	2.5	Sequence 1629 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235634.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *||||||||*||*|||||||||| targets:172   UGGUCAAACAUUGAUUAAAAAGU   194 Target Full Sequence	2.5	Sequence 1629 from Patent EP2985353	NA	coding protein	psRNATarget
HI403504.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *||||||||*||*|||||||||| targets:172   UGGUCAAACAUUGAUUAAAAAGU   194 Target Full Sequence	2.5	Sequence 1629 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015757652.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   *||||||||*|||*||||||||| targets:1517   CGGUCAAACAUUUUUUAAAAAGU   1539 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chlorophyllase-2, chloroplastic (LOC4348648), mRNA	chlorophyllase-2, chloroplastic(LOC4348648)	coding protein	psRNATarget
AK109894.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   ****|||||*||||||||||||* targets:623   UAUCCAAACAUUUAUUAAAAAGA   645 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-149-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015777710.1	ncRNA:23   UCCAGUUUGCAAAUAAUUUUUCA   1   ****|||||*||||||||||||* targets:726   UAUCCAAACAUUUAUUAAAAAGA   748 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334665 (LOC4334665), mRNA	uncharacterized LOC4334665(LOC4334665)	coding protein	psRNATarget
AK241447.1	ncRNA:23   UC-CAGUUUGCAAAUAAUUUUUCA   1   ||-|*|||||*|||||*||||||| targets:1954   AGAGCCAAACAUUUAUCAAAAAGU   1977 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065163F05, full insert sequence	NA	coding protein	psRNATarget