Search result

BaseInfo

ncRNA ID	novel_osa_miR1511
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:17625254-17625454 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2857735;SRR3123645;SRR1738226
Length	24
Mature sequence(if miRNA)	178 - AUUUUGGUCAAAGUCAAACUGCUU - 201
Stem-loop(if miRNA)	--A                                   AUA          A   ---            U  AC  A    -AAA       UAAA    UAU    UUUUGGUCAAAGUCAAACUGCUUCAAGUUUGACUA   AGUUUAUAGA AAA   AUAGUAAUAUUU CG  AC AGAU    UUUAUUA    AAUA   U    |||||||||||||||||||||||||||||||||||   |||||||||| |||   |||||||||||| ||  || ||||    |||||||    ||||    GAAACCAGUUUCAGUUUGACGAAGUUCAAACUGAU   UCAAAUAUCU UUU   UAUUAUUAUAAA GU  UG UUUA    AAAUAAU    UUAU   U ACC                                   ---          G   AUA            U  AA  A    AUAA       UUAA    UAA
Stem-loop sequence	AUUUUGGUCAAAGUCAAACUGCUUCAAGUUUGACUAAUAAGUUUAUAGAAAAAAUAGUAAUAUUUUCGACACAAGAUAAAUUUAUUAUAAAAAUAUAUUUAAUUAUUAAUUUAAUAAAAAUAAUUUAGUAAUGUAAAUAUUAUUAUAUAUUUGUCUAUAAACUUAGUCAAACUUGAAGCAGUUUGACUUUGACCAAAGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837874.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ||||||||||||||||||||||=| targets:313   AAGCAGUUUGACUUUGACCAAAGU   336 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
CT833782.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   |||=||||||||||||||||||=| targets:792   AAGUAGUUUGACUUUGACCAAAGU   815 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN045G22, full insert sequence	NA	coding protein	psRNATarget
AK288417.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   =||=|||||||||||||||||||| targets:3240   GAGUAGUUUGACUUUGACCAAAAU   3263 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence	NA	coding protein	psRNATarget
XM_015759791.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   |||||||||*||||||||||||=| targets:1022   AAGCAGUUUAACUUUGACCAAAGU   1045 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X2, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
XM_015759790.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   |||||||||*||||||||||||=| targets:1036   AAGCAGUUUAACUUUGACCAAAGU   1059 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X1, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
AK243189.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   |||||||||*||||||||||||=| targets:956   AAGCAGUUUAACUUUGACCAAAGU   979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100039G08, full insert sequence	NA	coding protein	psRNATarget
AK288358.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   |||||*||||||||||||||||=| targets:1066   AAGCAAUUUGACUUUGACCAAAGU   1089 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK243096.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ||*=||||||||||||||||||=| targets:1995   AAAUAGUUUGACUUUGACCAAAGU   2018 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100024A13, full insert sequence	NA	coding protein	psRNATarget
XM_015756152.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ||*=||||||||||||||||||=| targets:1966   AAAUAGUUUGACUUUGACCAAAGU   1989 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group basic blue protein (LOC4347927), mRNA	basic blue protein(LOC4347927)	coding protein	psRNATarget
XM_015757710.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ||*=||||||||||||||||||=| targets:35   AAAUAGUUUGACUUUGACCAAAGU   58 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK288994.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ||*=||||||||||||||||||=| targets:1794   AAAUAGUUUGACUUUGACCAAAGU   1817 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget
CT828455.1	ncRNA:24   UUCG-UCAAACUGAAACUGGUUUUA   1   ||||-|*|||||||||||=|||||| targets:588   AAGCUAUUUUGACUUUGAUCAAAAU   612 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226M15, full insert sequence	NA	coding protein	psRNATarget
AK288811.1	ncRNA:24   UUCGUCAAACUGAAACUGGUUUUA   1   ****|*||||||||||||||||=| targets:2048   UUCAAAUUUGACUUUGACCAAAGU   2071 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget