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BaseInfo

ncRNA ID novel_osa_miR1510
Species Oryza sativa
Class miRNA
Genome position Chr1:17742460-17742530 [-]
Reference genome IRGSP-1.0
Source SRR1743000;SRR2040388;SRR3123645;SRR1738226;SRR1738241
Length 21
Mature sequence(if miRNA) 51 - AAUUGUUUCCGAUCGUUGGAU - 71
Stem-loop(if miRNA) --   UG    C       G     C  A U  CC
  AAU  UUUC GAUCGUU GAUCU AC G GU  A
  |||  |||| ||||||| ||||| || | ||  U
  UUA  AAAG CUAGCAA CUAGA UG C CG  C
AU   GU    C       A     U  A C  UC
Stem-loop sequence AAUUGUUUCCGAUCGUUGGAUCUCACAGUGUCCAUCCUGCCCAGUUAGAUCAAACGAUCCGAAAUGAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404119.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  ||||||||||||||||=||||
targets:103   AUCCAACGAUCGGAAAUAAUU   123

1.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  ||||||||||||||||=||||
targets:103   AUCCAACGAUCGGAAAUAAUU   123

1.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
JB164580.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  ||||||||||||||||=||||
targets:103   AUCCAACGAUCGGAAAUAAUU   123

1.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
AK108234.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||||||||||||=|||
targets:499   AUCCAACGAUCGGAAACGAUU   519

1.5 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
AK103106.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  ||||||||||||||||=||||
targets:1490   AUCCAACGAUCGGAAAUAAUU   1510

1.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  ||||||||||||||||=||||
targets:1489   AUCCAACGAUCGGAAAUAAUU   1509

1.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015779655.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||||||||||||=|||
targets:1556   AUCCAACGAUCGGAAACGAUU   1576

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
XM_015778221.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||||||||||||=|||
targets:3061   AUCCAACGAUCGGAAACGAUU   3081

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||||||||||||=|||
targets:3112   AUCCAACGAUCGGAAACGAUU   3132

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
AK063705.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||=||||=||||||||||
targets:576   AUCCAGCGAUUGGAAACAAUU   596

2.5 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
XM_015783108.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||=|||||||||||||=|||
targets:966   AUCUAACGAUCGGAAACGAUU   986

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA uncharacterized LOC107277789(LOC107277789) coding protein psRNATarget
EF626940.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||=||||=||||||||||
targets:1082   AUCCAGCGAUUGGAAACAAUU   1102

2.5 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
XM_015755547.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||=||||=||||||||||
targets:1557   AUCCAGCGAUUGGAAACAAUU   1577

2.5 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
JB163994.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |*|||||||||||||||||||
targets:59   AACCAACGAUCGGAAACAAUU   79

0.0 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
HI403533.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |*|||||||||||||||||||
targets:59   AACCAACGAUCGGAAACAAUU   79

0.0 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
LQ235663.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |*|||||||||||||||||||
targets:59   AACCAACGAUCGGAAACAAUU   79

0.0 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
HI404330.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*|||||||||=|||
targets:54   AUCCAACAAUCGGAAACGAUU   74

2.5 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
JB164791.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*|||||||||=|||
targets:54   AUCCAACAAUCGGAAACGAUU   74

2.5 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget
LQ236460.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*|||||||||=|||
targets:54   AUCCAACAAUCGGAAACGAUU   74

2.5 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
HI404431.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*||=||||||||||
targets:98   AUCCAACAAUUGGAAACAAUU   118

2.5 Sequence 2556 from Patent EP2074227 NA coding protein psRNATarget
LQ236561.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*||=||||||||||
targets:98   AUCCAACAAUUGGAAACAAUU   118

2.5 Sequence 2556 from Patent EP2985353 NA coding protein psRNATarget
JB164892.1
ncRNA:21   UAGGUUGCUAGCCUUUGUUAA   1
  |||||||*||=||||||||||
targets:98   AUCCAACAAUUGGAAACAAUU   118

2.5 Sequence 2556 from Patent EP2559767 NA coding protein psRNATarget
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