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BaseInfo

ncRNA ID novel_osa_miR1509
Species Oryza sativa
Class miRNA
Genome position Chr11:26063355-26063438 [+]
Reference genome IRGSP-1.0
Source SRR1743000
Length 23
Mature sequence(if miRNA) 62 - UUAAGGAGCCGUAUGUGAAAAUG - 84
Stem-loop(if miRNA) --    UG        C           CU     UG    U
  UUUU  CAUGUGGC CCUUAAGAGGC  GUAUG  AAAA C
  ||||  |||||||| |||||||||||  |||||  ||||
  AAAA  GUAUGCCG GGAAUUCUCUG  UGUAC  UUUU G
GU    GU        A           AG     GU    A
Stem-loop sequence UUUUUGCAUGUGGCCCCUUAAGAGGCCUGUAUGUGAAAAUCGAUUUUUGCAUGUGAGUCUCUUAAGGAGCCGUAUGUGAAAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288665.1
ncRNA:23   GUAAAAGUGUAUGCCGAGGAAUU   1
  |||||||==||||||||||||||
targets:1421   CAUUUUCGUAUACGGCUCCUUAA   1443

2.0 Oryza sativa Japonica Group cDNA, clone: J090058G11, full insert sequence NA coding protein psRNATarget