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BaseInfo

ncRNA ID	novel_osa_miR1505
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:18777502-18777657 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	21
Mature sequence(if miRNA)	136 - GCACUGUUUGACCAUUUGUCU - 156
Stem-loop(if miRNA)	--   C         A           C      UUU     ---------- UAUUAUUUAUUUUAUUUGUGACUUACUUUA   GCA UGUUUGACC UUUGUCUUAUU AAAAAA   UAGAA          U                              U   ||| ||||||||| ||||||||||| ||||||   |||||          |                              U   UGU ACAAACUGG GAGCAGAAUAA UUUUUU   AAUAC          U                              A AA   A         A           A      -UA     GUUUAUAUUU UUGUUUUUCAACACAAAUUUCAUGAAACCU
Stem-loop sequence	GCACUGUUUGACCAUUUGUCUUAUUCAAAAAAUUUUAGAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCAAAGUACUUUAAACACAACUUUUUGUUUUUUAUAUUUGCAUAAAUUUUUUUAAAUAAGACGAGAGGUCAAACAAUGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066510.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||||||||||||||||||| targets:1422   AGACAAAUGGUCAAACAGUGC   1442 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|||||||||||||||| targets:603   AGACGAAUGGUCAAACAGUGC   623 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|||||||||||||||| targets:1701   AGACGAAUGGUCAAACAGUGC   1721 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
LQ236219.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|||||||||||||||= targets:150   AGACGAAUGGUCAAACAGUGU   170 Target Full Sequence	2.0	Sequence 2214 from Patent EP2985353	NA	coding protein	psRNATarget
HI404089.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|||||||||||||||= targets:150   AGACGAAUGGUCAAACAGUGU   170 Target Full Sequence	2.0	Sequence 2214 from Patent EP2074227	NA	coding protein	psRNATarget
JB164550.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|||||||||||||||= targets:150   AGACGAAUGGUCAAACAGUGU   170 Target Full Sequence	2.0	Sequence 2214 from Patent EP2559767	NA	coding protein	psRNATarget
CT837708.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|=|||||||||||||| targets:666   AGACGAGUGGUCAAACAGUGC   686 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:21   UCUGUUUACCAGUUUGUCACG   1   ||||=|=|||||||||||||| targets:183   AGACGAGUGGUCAAACAGUGC   203 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget