ncRNA ID | novel_osa_miR1503 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:24088886-24089102 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000;SRR4407954;SRR4407960;SRR4407961;SRR1738224 |
Length | 24 |
Mature sequence(if miRNA) | 194 - CUUGGAACUCACACUUAUCGAUGG - 217 |
Stem-loop(if miRNA) |
--     C               A     G                      C        C   A                       C          U    A AA   AUCGA AAGUGUGAGUUCCAA AAAUG CAUCGUACAAAUGAUUUUGUCC AAAAAUAC AUC CCGUUAGGGUUCCGUCCAUUCCG GCUGUUAAGU AUAU G  U   ||||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||| |||| |   UAGCU UUCACACUCAAGGUU UUUAC GUAGCAUGUUUGCUAAAAUAGG UUUUUAUG UAG GGCAAUCCCAAGGCAGGUAAGGC CGGCAAUUUA UGUG C  G GG     A               C     G                      A        A   C                       A          -    A AA |
Stem-loop sequence | AUCGACAAGUGUGAGUUCCAAAAAAUGGCAUCGUACAAAUGAUUUUGUCCCAAAAAUACCAUCACCGUUAGGGUUCCGUCCAUUCCGCGCUGUUAAGUUAUAUAGAAUGAACAGUGUAUUUAACGGCACGGAAUGGACGGAACCCUAACGGCGAUAGUAUUUUUAGGAUAAAAUCGUUUGUACGAUGGCAUUUCUUGGAACUCACACUUAUCGAUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015763566.1 |
|
1.0 | PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC107276166), mRNA | receptor-like protein 12(LOC107276166) | coding protein | psRNATarget |