Search result

BaseInfo

ncRNA ID	novel_osa_miR1493
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:20864700-20864904 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1849770;SRR1849773;SRR2857732;SRR3123630;SRR3123645;SRR3123646;SRR3123648;SRR1738225;SRR1738226;SRR1738228;SRR1738235
Length	24
Mature sequence(if miRNA)	1 - AAUAACUCAUCAAGAUCUAGAACU - 24
Stem-loop(if miRNA)	--                                G  C          A    A     A      C            A  G    --CUCUUAUC     U   AAUAACUCAUCAAGAUCUAGAACUUUUAUUUU GU AUUUCUUCAU CGAC AAGUG UAGUAA AUUGUUCACAAA UU ACAU          UGGUU U   |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| |||||| |||||||||||| || ||||          ||||| A   UUAUUGAGUAGUUCUAGAUUUUGAAAAUAAAA CA UAAAGAAGUA GCUG UUUAC AUCAUU UAAUAAGUGUUU AA UGUA          AUCAA U AC                                A  A          G    C     A      A            A  A    UAUACACAAU     A
Stem-loop sequence	AAUAACUCAUCAAGAUCUAGAACUUUUAUUUUGGUCAUUUCUUCAUACGACAAAGUGAUAGUAACAUUGUUCACAAAAUUGACAUCUCUUAUCUGGUUUUAUAAACUAUAACACAUAUAUGUAAAAUUUGUGAAUAAUAUUACUAACAUUUCGUCGGAUGAAGAAAUAACAAAAAUAAAAGUUUUAGAUCUUGAUGAGUUAUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||=||||||||||||||||||| targets:1173   AGUUUUAGAUCUUGAUGAGUUAUU   1196 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*|||||*||||||||||||* targets:1327   AGUUAUAGAUGUUGAUGAGUUAUA   1350 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015764209.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK068923.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:1479   AGUUAUAGAUCUUGAUGAGUUAUA   1502 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||*|||||||||||||||* targets:122   AGUUAUAAAUCUUGAUGAGUUAUA   145 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget