Search result

BaseInfo

ncRNA ID novel_osa_miR1483
Species Oryza sativa
Class miRNA
Genome position Chr11:17835281-17835394 [+]
Reference genome IRGSP-1.0
Source SRR1743000
Length 24
Mature sequence(if miRNA) 1 - AAAAACCAACUUAGUACUGGAUGU - 24
Stem-loop(if miRNA) --     CC   U               GACACAUCC   C  UAC      G  CAU
  AAAAA  AAC UAGUACUGGAUGUGA         UAA AC   GAAUCU GA   C
  |||||  ||| |||||||||||||||         ||| ||   |||||| ||
  UUUUU  UUG AUCAUGACCUACACU         AUU UG   UUUAGA CU   U
AU     AC   C               --AUAUAAA   A  UUA      G  AUC
Stem-loop sequence AAAAACCAACUUAGUACUGGAUGUGAGACACAUCCUAACACUACGAAUCUGGACAUCUCUAUCGAGAUUUAUUGUAUUAAAAUAUAUCACAUCCAGUACUACGUUCAUUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT829763.1
ncRNA:24   UGUAGGUCAUGAUUCAACCAAAAA   1
  ||||||=|||||||||||*|||||
targets:1032   ACAUCCGGUACUAAGUUGAUUUUU   1055

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence NA coding protein psRNATarget
AK288793.1
ncRNA:24   UGUAGGUCAUGAUUCAACCAAAAA   1
  ||||*==|||||||||||||||||
targets:888   ACAUGUGGUACUAAGUUGGUUUUU   911

2.0 Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence NA coding protein psRNATarget