ncRNA ID | novel_osa_miR1483 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:17835281-17835394 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAAAACCAACUUAGUACUGGAUGU - 24 |
Stem-loop(if miRNA) |
--     CC   U               GACACAUCC   C  UAC      G  CAU   AAAAA  AAC UAGUACUGGAUGUGA         UAA AC   GAAUCU GA   C   |||||  ||| |||||||||||||||         ||| ||   |||||| ||   UUUUU  UUG AUCAUGACCUACACU         AUU UG   UUUAGA CU   U AU     AC   C               --AUAUAAA   A  UUA      G  AUC |
Stem-loop sequence | AAAAACCAACUUAGUACUGGAUGUGAGACACAUCCUAACACUACGAAUCUGGACAUCUCUAUCGAGAUUUAUUGUAUUAAAAUAUAUCACAUCCAGUACUACGUUCAUUUUUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CT829763.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK288793.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence | NA | coding protein | psRNATarget |