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BaseInfo

ncRNA ID	novel_osa_miR1474
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:14790345-14790415 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1743002;SRR2040390;SRR2040394;SRR2040398;SRR2040399;SRR2040408;SRR2040410;SRR2857736;SRR3123646;SRR1738210;SRR1738227;SRR1738228
Length	24
Mature sequence(if miRNA)	1 - ACUGCGAGACGAAUCUUUAAGCCU - 24
Stem-loop(if miRNA)	--ACU               -A             C      GCGAGACGAAUCUUU  AGCCUAAUUAAUU A      |||||||||||||||  |||||||||||||      UGUUCUGCUUAGAAA  UCGGAUUAAUUAG U UUUAG               AC             A
Stem-loop sequence	ACUGCGAGACGAAUCUUUAAGCCUAAUUAAUUCAUAGAUUAAUUAGGCUCAAAAGAUUCGUCUUGUGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288184.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||||||||-|*|||||||||||||| targets:954   AGGCUUAAUAAAUUCGUCUCGCAGU   978 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||||||||-|*|||||||||||||| targets:835   AGGCUUAAUAAAUUCGUCUCGCAGU   859 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||||||||-|*|||||||||||||| targets:2210   AGGCUUAAUAAAUUCGUCUCGCAGU   2234 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
XM_015780200.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||||||||-|*|||||||||||||| targets:38   AGGCUUAAUAAAUUCGUCUCGCAGU   62 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC4336891), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC4336891)	coding protein	psRNATarget
CT837782.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   |||=||||-|*|||||||||||||| targets:1521   AGGUUUAAUAAAUUCGUCUCGCAGU   1545 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   =|||||||-|*|||||||||||||| targets:1770   GGGCUUAAUAAAUUCGUCUCGCAGU   1794 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||||*|||-|*|||||||||||||| targets:903   AGGCCUAAUAAAUUCGUCUCGCAGU   927 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   ||*|||||-|*|||||||||||||| targets:1757   AGACUUAAUAAAUUCGUCUCGCAGU   1781 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   |*||||||-|*|||||||||||||| targets:714   AAGCUUAAUAAAUUCGUCUCGCAGU   738 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   UCCGAAUU-UCUAAGCAGAGCGUCA   1   |*||||||-|*|||||||||||||| targets:719   AAGCUUAAUAAAUUCGUCUCGCAGU   743 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget