ncRNA ID | novel_osa_miR1462 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:33324058-33324179 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000;SRR1738227 |
Length | 22 |
Mature sequence(if miRNA) | 101 - UCCCAAAAAUGUCAUCGCCGUU - 122 |
Stem-loop(if miRNA) |
--  C                              A      C C      AUACA    UC   UC CAAAAAUGUCAUCGCCGUUAGUAUUCCGUC AUUCCG G CAUUAA     UUGU  A   || |||||||||||||||||||||||||||||| |||||| | ||||||     ||||   AG GUUUUUACGGUAGUGGCAAUCAUAAGGCAG UAGGGC C GUAAUU     GAUA  C AC  A                              A      A A      --CAC    UC |
Stem-loop sequence | UCCCAAAAAUGUCAUCGCCGUUAGUAUUCCGUCAAUUCCGCGCCAUUAAAUACAUUGUUCACCUAUAGCACUUAAUGACACGGGAUAGACGGAAUACUAACGGUGAUGGCAUUUUUGAGACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015768858.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC9272257), mRNA | disease resistance protein RPM1(LOC9272257) | coding protein | psRNATarget |