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BaseInfo

ncRNA ID novel_osa_miR1462
Species Oryza sativa
Class miRNA
Genome position Chr1:33324058-33324179 [-]
Reference genome IRGSP-1.0
Source SRR1743000;SRR1738227
Length 22
Mature sequence(if miRNA) 101 - UCCCAAAAAUGUCAUCGCCGUU - 122
Stem-loop(if miRNA) --  C                              A      C C      AUACA    UC
  UC CAAAAAUGUCAUCGCCGUUAGUAUUCCGUC AUUCCG G CAUUAA     UUGU  A
  || |||||||||||||||||||||||||||||| |||||| | ||||||     ||||
  AG GUUUUUACGGUAGUGGCAAUCAUAAGGCAG UAGGGC C GUAAUU     GAUA  C
AC  A                              A      A A      --CAC    UC
Stem-loop sequence UCCCAAAAAUGUCAUCGCCGUUAGUAUUCCGUCAAUUCCGCGCCAUUAAAUACAUUGUUCACCUAUAGCACUUAAUGACACGGGAUAGACGGAAUACUAACGGUGAUGGCAUUUUUGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015768858.1
ncRNA:22   UUGCCGCUACUGUAAAAACCCU   1
  ||*||*|||||||||*||||||
targets:499   AAAGGAGAUGACAUUGUUGGGA   520

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC9272257), mRNA disease resistance protein RPM1(LOC9272257) coding protein psRNATarget