ncRNA ID | novel_osa_miR1450 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:9033887-9034027 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000 |
Length | 24 |
Mature sequence(if miRNA) | 118 - AUGUGAACAAUGAUAGAAAAUCUU - 141 |
Stem-loop(if miRNA) |
--  C      A      -                             -    U ---  UAUAUAUUAAUGA   GA UUUCUA CGUUGU CACAUUCAUAUAGAUGUUAAUGAAUCUUG CAUU A   UA             A   || |||||| |||||| ||||||||||||||||||||||||||||| |||| |   ||             U   CU AAAGAU GUAACA GUGUAAGUAUAUCUACAAUUACUUAGAAU UUGG A   CU             C UU  A      A      A                             A    - UAU  ACAAGUGUAAGUU |
Stem-loop sequence | GACUUUCUAACGUUGUCACAUUCAUAUAGAUGUUAAUGAAUCUUGCAUUUAUAUAUAUAUUAAUGAAUCUUGAAUGUGAACAUCUAUAGGUUAUAAGAUUCAUUAACAUCUAUAUGAAUGUGAACAAUGAUAGAAAAUCUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK242012.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence | NA | coding protein | psRNATarget |