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BaseInfo

ncRNA ID	novel_osa_miR1449
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:39352885-39353087 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2890846
Length	24
Mature sequence(if miRNA)	180 - AAGAUAGAUCAAUAUGUAAUGUAU - 203
Stem-loop(if miRNA)	--                          A                   --               A  A     U          CAA    -C    -   U   AAGAUAGAUCAAUAUGUAAUGUAUCA UCCACAAACAUGCAAGUUA  AUUCAACUUCUACAG UU UAAUA AAAUAACAAA   AACU  AAAU UAC A   |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||| || ||||| ||||||||||   ||||  |||| ||| U   UUCUAUCUAGUUAUACAUUAUAUAGU AGGUGUUUGUACGUUCAAU  UAAGUUGAAGAUGUU AA AUUGU UUUAUUGUUU   UUGA  UUUA AUG A CG                          G                   UU               C  C     U          AAA    CA    U   U
Stem-loop sequence	AAGAUAGAUCAAUAUGUAAUGUAUCAAUCCACAAACAUGCAAGUUAAUUCAACUUCUACAGAUUAUAAUAUAAAUAACAAACAAAACUCAAAUUACUAUAUGUAUAUUUACAGUUAAAUUUGUUAUUUUUGUUACAACUUGUAGAAGUUGAAUUUUAACUUGCAUGUUUGUGGAGUGAUAUAUUACAUAUUGAUCUAUCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120309.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||*||||||||||||||||| targets:6287   AUAUAUCACAUAUUGAUCUAUCUU   6310 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013055D13, full insert sequence	NA	coding protein	psRNATarget
AK064956.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||||=|||*||||||||||| targets:1099   AUAUAUUAUAUAGUGAUCUAUCUU   1122 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001A06, full insert sequence	NA	coding protein	psRNATarget
AK107061.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||*|=||||||||||||||| targets:935   AUAUAUCAUAUAUUGAUCUAUCUU   958 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-121-E01, full insert sequence	NA	coding protein	psRNATarget
AK107231.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||*|=||||||||||||||| targets:1380   AUAUAUCAUAUAUUGAUCUAUCUU   1403 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-125-E04, full insert sequence	NA	coding protein	psRNATarget
CT834888.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||*|=||||||||||||||| targets:506   AUAUAUCAUAUAUUGAUCUAUCUU   529 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103P09, full insert sequence	NA	coding protein	psRNATarget
XM_015757164.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   |||=||*|||||||||||||||*| targets:25   AUAUAUCACAUAUUGAUCUAUCCU   48 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269623 (LOC9269623), transcript variant X1, mRNA	uncharacterized LOC9269623(LOC9269623)	coding protein	psRNATarget
LQ235681.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   ||*=||||=|||||*||||||||| targets:229   AUUUAUUAUAUAUUAAUCUAUCUU   252 Target Full Sequence	2.5	Sequence 1676 from Patent EP2985353	NA	coding protein	psRNATarget
HI403551.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   ||*=||||=|||||*||||||||| targets:229   AUUUAUUAUAUAUUAAUCUAUCUU   252 Target Full Sequence	2.5	Sequence 1676 from Patent EP2074227	NA	coding protein	psRNATarget
JB164012.1	ncRNA:24   UAUGUAAUGUAUAACUAGAUAGAA   1   ||*=||||=|||||*||||||||| targets:229   AUUUAUUAUAUAUUAAUCUAUCUU   252 Target Full Sequence	2.5	Sequence 1676 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015794836.1	ncRNA:24   UA---UGUAAUGUAUAACUAGAUAGAA   1   ||---|=|||*||||||||||||||*| targets:647   AUGGCAUAUUUCAUAUUGAUCUAUCAU   673 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 41 (LOC9266817), transcript variant X3, mRNA	NAC domain-containing protein 41(LOC9266817)	coding protein	psRNATarget
XM_015794837.1	ncRNA:24   UA---UGUAAUGUAUAACUAGAUAGAA   1   ||---|=|||*||||||||||||||*| targets:647   AUGGCAUAUUUCAUAUUGAUCUAUCAU   673 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 41 (LOC9266817), transcript variant X4, mRNA	NAC domain-containing protein 41(LOC9266817)	coding protein	psRNATarget