Search result

BaseInfo

ncRNA ID	novel_osa_miR1446
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:41315351-41315486 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR5351740
Length	24
Mature sequence(if miRNA)	1 - AAACAUAGGAUUCUGACAGGAAUA - 24
Stem-loop(if miRNA)	--     A        A                   CA        AC             U     C   UUCCU UCAGAAUC UAUGUUUUUCCUAUUCCUC  UUUUUUCA  CCUGUGAUUCAAA GGGCC U   ||||| |||||||| |||||||||||||||||||  ||||||||  ||||||||||||| |||||   AAGGA AGUCUUAG AUACAAAAAGGAUAAGGAG  AAAAAAGU  GGAUGCUAAGUUU CCCGG A AU     C        G                   AC        AA             C     G
Stem-loop sequence	UUCCUAUCAGAAUCAUAUGUUUUUCCUAUUCCUCCAUUUUUUCAACCCUGUGAUUCAAAUGGGCCCUAGGGCCCCUUUGAAUCGUAGGAAUGAAAAAACAGAGGAAUAGGAAAAACAUAGGAUUCUGACAGGAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837837.1	ncRNA:24   AUAAGGACAGUCUUAGGAUACAAA   1   ||||||||||||||||||||*||| targets:1330   UAUUCCUGUCAGAAUCCUAUAUUU   1353 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129N04, full insert sequence	NA	coding protein	psRNATarget
AK106598.1	ncRNA:24   AUAAGGACAGUCUUAGGAUACAAA   1   *||||||||=||||||||=||||| targets:1594   AAUUCCUGUUAGAAUCCUGUGUUU   1617 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-A12, full insert sequence	NA	coding protein	psRNATarget
AK288502.1	ncRNA:24   AUAAGGACAGUCUUAGGAUACAAA   1   *||||||||||||||||||*|||| targets:1030   CAUUCCUGUCAGAAUCCUACGUUU   1053 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
AM778049.1	ncRNA:24   AUAAGGACAGUCUUAGGAUACAAA   1   *||||||*||||||||||=||||| targets:69   AAUUCCUAUCAGAAUCCUGUGUUU   92 Target Full Sequence	2.5	Oryza sativa Indica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar IR64	NA	coding protein	psRNATarget