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BaseInfo

ncRNA ID ath-miR5020b
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:6787003-6787153 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 106 - AUGGCAUGAAAGAAGGUGAGA - 126
Stem-loop(if miRNA) --UGA      AUUA G         CAU    U                   ----    -U       AACC    C
     GAGAUA    U AGUGAUGGU   GGCA GAAAGAAGGUGAGAAUUGC    AUCG  GAAUCAA    UCCA A
     ||||||    | |||||||||   |||| |||||||||||||||||||    ||||  |||||||    |||| A
     UUUUAU    A UCACUACUA   UCGU CUUUCUUUCAUUCUUAACG    UAGU  UUUAGUU    AGGU G
ACUAA      ---G G         UCC    U                   CAAC    CU       CUAU    U
Stem-loop sequence UGAGAGAUAAUUAUGAGUGAUGGUCAUGGCAUGAAAGAAGGUGAGAAUUGCAUCGUGAAUCAAAACCUCCACAAGUUGGAUAUCUUGAUUUUCUGAUCAACGCAAUUCUUACUUUCUUUCUUGCUCCUAUCAUCACUGAGUAUUUUAAUCA

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).