ncRNA ID | ath-miR5020b |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:6787003-6787153 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 106 - AUGGCAUGAAAGAAGGUGAGA - 126 |
Stem-loop(if miRNA) |
--UGA      AUUA G         CAU    U                   ----    -U       AACC    C      GAGAUA    U AGUGAUGGU   GGCA GAAAGAAGGUGAGAAUUGC    AUCG  GAAUCAA    UCCA A      ||||||    | |||||||||   |||| |||||||||||||||||||    ||||  |||||||    |||| A      UUUUAU    A UCACUACUA   UCGU CUUUCUUUCAUUCUUAACG    UAGU  UUUAGUU    AGGU G ACUAA      ---G G         UCC    U                   CAAC    CU       CUAU    U |
Stem-loop sequence | UGAGAGAUAAUUAUGAGUGAUGGUCAUGGCAUGAAAGAAGGUGAGAAUUGCAUCGUGAAUCAAAACCUCCACAAGUUGGAUAUCUUGAUUUUCUGAUCAACGCAAUUCUUACUUUCUUUCUUGCUCCUAUCAUCACUGAGUAUUUUAAUCA |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |