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BaseInfo

ncRNA ID novel_osa_miR1414
Species Oryza sativa
Class miRNA
Genome position Chr1:9984269-9984368 [-]
Reference genome IRGSP-1.0
Source SRR1742996;SRR1738214;SRR1738223;SRR1738223
Length 24
Mature sequence(if miRNA) 77 - CCCAGGCAAUUGUAUCGUCUACGU - 100
Stem-loop(if miRNA) --CCC      U          --  GUC    UC        CUACAUCAG
     AGGCAA UGUAUCGUCU  AC   GGCA  GUUCAAGG         U
     |||||| ||||||||||  ||   ||||  ||||||||
     UCCGUU AUAUAGUAGG  UG   UCGU  UAGGUUCU         A
AUCCA      U          UU  AUC    --        CCAGCUUAC
Stem-loop sequence CCCAGGCAAUUGUAUCGUCUACGUCGGCAUCGUUCAAGGCUACAUCAGUACAUUCGACCUCUUGGAUUGCUCUAGUUUGGAUGAUAUAUUUGCCUACCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288885.1
ncRNA:24   UGCAUCUGCUAUGUUAACGGACCC   1
  |=|||||=||*|||||||||||||
targets:3655   AUGUAGAUGAGACAAUUGCCUGGG   3678

2.0 Oryza sativa Japonica Group cDNA, clone: J090079K20, full insert sequence NA coding protein psRNATarget
AK289121.1
ncRNA:24   UGCAUCUGCUAUGUUAACGGACCC   1
  |||||*|||||||||||||||*||
targets:2513   ACGUAAACGAUACAAUUGCCUAGG   2536

2.5 Oryza sativa Japonica Group cDNA, clone: J090097J21, full insert sequence NA coding protein psRNATarget