ncRNA ID | novel_osa_miR1410 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr9:22824113-22824306 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742996 |
Length | 21 |
Mature sequence(if miRNA) | 174 - UGUCUCGCCGGUUAGACCGCC - 194 |
Stem-loop(if miRNA) |
--           AA U      -AC     U     CC   -AAGCCAU     U     --A   UG   AUCUG         C  -A    ---A  UG   CGGUCUGACCG  G AGAUGC   CGGUC GACCG  UGG        CGGUC GACCG   GAU  AUU     GUCGGACCG CG  GAUU    GC  C   |||||||||||  | ||||||   ||||| |||||  |||        ||||| |||||   |||  |||     ||||||||| ||  ||||    ||   GCCAGAUUGGC  C UCUGUG   GCCAG UUGGC  GCC        GCCAG CUGGU   CUA  UAA     CAGUCUGGC GC  CUGA    CG  C CC           CG -      GUC     U     -U   GUAACACC     U     CAC   GU   --CCA         C  CG    AGUC  CG |
Stem-loop sequence | CGGUCUGACCGAAGUAGAUGCACCGGUCUGACCGCCUGGAAGCCAUCGGUCUGACCGAGAUUGAUUAUCUGGUCGGACCGCCGAGAUUAGCUGCCGCGCCUGAAGUCGCCGCCGGUCUGACACCAAUUGAUCCACUGGUCUGACCGCCACAAUGCCGUCGGUUUGACCGCUGGUGUCUCGCCGGUUAGACCGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288214.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence | NA | coding protein | psRNATarget |