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BaseInfo

ncRNA ID novel_osa_miR1410
Species Oryza sativa
Class miRNA
Genome position Chr9:22824113-22824306 [+]
Reference genome IRGSP-1.0
Source SRR1742996
Length 21
Mature sequence(if miRNA) 174 - UGUCUCGCCGGUUAGACCGCC - 194
Stem-loop(if miRNA) --           AA U      -AC     U     CC   -AAGCCAU     U     --A   UG   AUCUG         C  -A    ---A  UG
  CGGUCUGACCG  G AGAUGC   CGGUC GACCG  UGG        CGGUC GACCG   GAU  AUU     GUCGGACCG CG  GAUU    GC  C
  |||||||||||  | ||||||   ||||| |||||  |||        ||||| |||||   |||  |||     ||||||||| ||  ||||    ||
  GCCAGAUUGGC  C UCUGUG   GCCAG UUGGC  GCC        GCCAG CUGGU   CUA  UAA     CAGUCUGGC GC  CUGA    CG  C
CC           CG -      GUC     U     -U   GUAACACC     U     CAC   GU   --CCA         C  CG    AGUC  CG
Stem-loop sequence CGGUCUGACCGAAGUAGAUGCACCGGUCUGACCGCCUGGAAGCCAUCGGUCUGACCGAGAUUGAUUAUCUGGUCGGACCGCCGAGAUUAGCUGCCGCGCCUGAAGUCGCCGCCGGUCUGACACCAAUUGAUCCACUGGUCUGACCGCCACAAUGCCGUCGGUUUGACCGCUGGUGUCUCGCCGGUUAGACCGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288214.1
ncRNA:21   CCGCCAGAUUGGCCGCUCUGU   1
  |||||||||||||||||*|||
targets:525   GGCGGUCUAACCGGCGACACA   545

1.5 Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence NA coding protein psRNATarget