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BaseInfo

ncRNA ID novel_osa_miR1401
Species Oryza sativa
Class miRNA
Genome position Chr9:20029226-20029316 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555747;SRR1556014;SRR4407961;SRR1556020
Length 24
Mature sequence(if miRNA) 68 - AUAUUAAUUGUGUGAUCUUUUGAG - 91
Stem-loop(if miRNA) --     A                             AAUCCCAA
  CAAAA AUCACAUAAUUAAUAUAGCCAUUAAAACA        A
  ||||| |||||||||||||||||||||||||||||        A
  GUUUU UAGUGUGUUAAUUAUAUCGGUAAUUUUGU        G
GA     C                             AUCGACUA
Stem-loop sequence CAAAAAAUCACAUAAUUAAUAUAGCCAUUAAAACAAAUCCCAAAAGAUCAGCUAUGUUUUAAUGGCUAUAUUAAUUGUGUGAUCUUUUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100382.1
ncRNA:24   GAGUUUUCUAGUGUGUUAAUUAUA   1
  =**|=||||||||*|||||||||*
targets:1124   UAGAGAAGAUCACCCAAUUAAUAA   1147

2.5 Oryza sativa Japonica Group cDNA clone:J023085F21, full insert sequence NA coding protein psRNATarget