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BaseInfo

ncRNA ID	novel_osa_miR1399
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:1516792-1516848 [+]
Reference genome	IRGSP-1.0
Source	SRR1742996
Length	20
Mature sequence(if miRNA)	38 - CGGGCAGGCGGCGCGCGUGC - 57
Stem-loop(if miRNA)	--    U   U     C    C   G      GCGC CGC CGCCU GCCU GCC GGCC   |||| ||| ||||| |||| ||| |||G   UGCG GCG GCGGA CGGG CGG CCGG CG    C   -     -    C   G
Stem-loop sequence	GCGCUCGCUCGCCUCGCCUCGCCGGGCCGGGCCGGGCCGGGCAGGCGGCGCGCGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759618.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   |||||||||||*|||||||| targets:792   GCACGCGCGCCACCUGCCCG   811 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL51-like (LOC107278088), mRNA	RING-H2 finger protein ATL51-like(LOC107278088)	coding protein	psRNATarget
XM_015766384.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   ||=||||||||||||*|||| targets:61   GCGCGCGCGCCGCCUCCCCG   80 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable arabinosyltransferase ARAD1 (LOC4327360), transcript variant X1, mRNA	probable arabinosyltransferase ARAD1(LOC4327360)	coding protein	psRNATarget
AK288096.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   ||=||||||||||||*|||| targets:71   GCGCGCGCGCCGCCUCCCCG   90 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075192C12, full insert sequence	NA	coding protein	psRNATarget
XM_015772075.1	ncRNA:20   CGUGCGCGCGG-CGGACGGGC   1   *||||||||||-||||||||| targets:361   CCACGCGCGCCCGCCUGCCCG   381 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein TIC 20-v, chloroplastic (LOC4330592), mRNA	protein TIC 20-v, chloroplastic(LOC4330592)	coding protein	psRNATarget
AK288484.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   ||||||||||||||*||||* targets:1570   GCACGCGCGCCGCCCGCCCU   1589 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090040D01, full insert sequence	NA	coding protein	psRNATarget
XM_015778274.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   *|||||||||||||*||||| targets:9   ACACGCGCGCCGCCCGCCCG   28 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ribonuclease P/MRP protein subunit POP5 (LOC4335406), mRNA	probable ribonuclease P/MRP protein subunit POP5(LOC4335406)	coding protein	psRNATarget
XM_015778240.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   *|*||||||||||||||=|| targets:1281   CCCCGCGCGCCGCCUGCUCG   1300 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g13880 (LOC9267950), mRNA	pentatricopeptide repeat-containing protein At3g13880(LOC9267950)	coding protein	psRNATarget
XM_015763675.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   *|=|||||||||||*||||| targets:311   CCGCGCGCGCCGCCCGCCCG   330 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327313 (LOC4327313), mRNA	uncharacterized LOC4327313(LOC4327313)	coding protein	psRNATarget
XM_015763364.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   |*|||||||||*|||||||| targets:379   GGACGCGCGCCUCCUGCCCG   398 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326897 (LOC4326897), mRNA	uncharacterized LOC4326897(LOC4326897)	coding protein	psRNATarget
AK106232.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   |*|||||||||*|||||||| targets:383   GGACGCGCGCCUCCUGCCCG   402 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-100-B07, full insert sequence	NA	coding protein	psRNATarget
XM_015783079.1	ncRNA:20   CGUGCGCGCGGCGGACGGGC   1   *|||||*||||||||||||* targets:857   CCACGCCCGCCGCCUGCCCC   876 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1-like (LOC107280933), mRNA	serine/arginine repetitive matrix protein 1-like(LOC107280933)	coding protein	psRNATarget