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BaseInfo

ncRNA ID	novel_osa_miR1398
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8180753-8180825 [+]
Reference genome	IRGSP-1.0
Source	SRR1742996
Length	24
Mature sequence(if miRNA)	50 - UCACAUCCCACCAAAAUCCCUUAU - 73
Stem-loop(if miRNA)	--            AA                 A A   AAGGGAUUUUGG  GGAUGUGAUGCAUCCUA G C   ||||||||||||  ||||||||||||||||| | U   UUCCCUAAAACC  CCUACACUGUGUAGGAU C A UA            AC                 C U
Stem-loop sequence	AAGGGAUUUUGGAAGGAUGUGAUGCAUCCUAAGACUAUCCUAGGAUGUGUCACAUCCCACCAAAAUCCCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241555.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   |||||*|||||||||||||||||| targets:128   AUAAGAGAUUUUGGUGGGAUGUGA   151 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
AK107672.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   |||||||||||||||*|||||||| targets:851   AUAAGGGAUUUUGGUUGGAUGUGA   874 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015781574.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   ||||*|||||||||||*||||||| targets:3377   AUAAAGGAUUUUGGUGAGAUGUGA   3400 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein CHROMATIN REMODELING 24 (LOC9266414), transcript variant X1, mRNA	protein CHROMATIN REMODELING 24(LOC9266414)	coding protein	psRNATarget
AK288937.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   ||||||||*|||||*||||||||| targets:1809   AUAAGGGAAUUUGGAGGGAUGUGA   1832 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082N15, full insert sequence	NA	coding protein	psRNATarget
AK288180.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   ||||||*|||||||*||||||||| targets:1286   AUAAGGUAUUUUGGAGGGAUGUGA   1309 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090005C24, full insert sequence	NA	coding protein	psRNATarget
AK288214.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   |||||*||*||||||||||||||| targets:2374   AUAAGAGACUUUGGUGGGAUGUGA   2397 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   UAUUCCCUAAAACCACCCUACACU   1   ||||||*|||||||*||||||||| targets:1052   AUAAGGAAUUUUGGAGGGAUGUGA   1075 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
LQ235976.1	ncRNA:19   CCUAAAACCACCCUACACU   1   |||||||||*||||||||| targets:1   GGAUUUUGGAGGGAUGUGA   19 Target Full Sequence	1.5	Sequence 1971 from Patent EP2985353	NA	coding protein	psRNATarget
HI403846.1	ncRNA:19   CCUAAAACCACCCUACACU   1   |||||||||*||||||||| targets:1   GGAUUUUGGAGGGAUGUGA   19 Target Full Sequence	1.5	Sequence 1971 from Patent EP2074227	NA	coding protein	psRNATarget
JB164307.1	ncRNA:19   CCUAAAACCACCCUACACU   1   |||||||||*||||||||| targets:1   GGAUUUUGGAGGGAUGUGA   19 Target Full Sequence	1.5	Sequence 1971 from Patent EP2559767	NA	coding protein	psRNATarget