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BaseInfo

ncRNA ID novel_osa_miR1397
Species Oryza sativa
Class miRNA
Genome position Chr6:13364905-13364979 [-]
Reference genome IRGSP-1.0
Source SRR1742996;SRR1743002;SRR1555747;SRR2040402;SRR2040403;SRR2097778;SRR2097779;SRR2098557;SRR1555751;SRR2099567;SRR2099568;SRR1556011;SRR2857734;SRR2857735;SRR2857736;SRR3123645;SRR3234044;SRR4407775;SRR4407777;SRR4407958;SRR4407961;SRR5049784;SRR5049786;SRR5049787;SRR5049789;SRR1556018;SRR5049793;SRR5351737;SRR5351738;SRR5351739;SRR1556020;SRR1654491;SRR1738214;SRR1738224;SRR1738226
Length 24
Mature sequence(if miRNA) 1 - GAAAAUCAUUUUCGCAGGCGGACC - 24
Stem-loop(if miRNA) --   U           C       AC     GA  AC
  UCC CUUGCGAAAAU GAUUUUC  AGGCG  GC  U
  ||| ||||||||||| |||||||  |||||  ||
  AGG GGACGCUUUUA CUAAAAG  UCCGC  CG  U
CC   C           -       CA     GA  AA
Stem-loop sequence UCCUCUUGCGAAAAUCGAUUUUCACAGGCGGAGCACUUAAGCAGCGCCUACGAAAAUCAUUUUCGCAGGCGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT827932.1
ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1
  ||*|||||||=||||||||||||=
targets:1761   GGACCGCCUGUGAAAAUGAUUUUU   1784

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108G07, full insert sequence NA coding protein psRNATarget
AK120802.1
ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1
  ||--||||||=|||||||||||||
targets:512   GG--CGCCUGUGAAAAUGAUUUUC   533

1.0 Oryza sativa Japonica Group cDNA clone:J023013A15, full insert sequence NA coding protein psRNATarget
AK288934.1
ncRNA:24   CCAG---GCGGACGCUUUUACUAAAAG   1
  *|||---|||||||||||||*|||||=
targets:3387   AGUCAACCGCCUGCGAAAAUCAUUUUU   3413

2.5 Oryza sativa Japonica Group cDNA, clone: J090082I21, full insert sequence NA coding protein psRNATarget
AK107035.1
ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1
  ||-|||||**||||||||||||||
targets:663   GG-CCGCCAACGAAAAUGAUUUUC   685

2.0 Oryza sativa Japonica Group cDNA clone:002-121-B08, full insert sequence NA coding protein psRNATarget
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