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BaseInfo

ncRNA ID	novel_osa_miR1385
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:8558640-8558813 [-]
Reference genome	IRGSP-1.0
Source	SRR1742996
Length	21
Mature sequence(if miRNA)	1 - CAGCAAACUGAAACAUGUCGC - 21
Stem-loop(if miRNA)	--           A       C             A         C                C   A   G          UGU  CC   GACAUGUUUCA UUUGCUG AACGAUAACGUGG AAAUUAUCA AAAACUGUAACUUUUA GUU UAU CUGUUACAGU   CA  U   ||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||| ||| ||| ||||||||||   ||   CUGUACAAAGU AAACGAC UUGCUAUUGUACC UUUAAUAGU UUUUGACGUUGAAAAU CAA AUA GAUGAUGUCA   GU  A CG           C       U             C         A                A   A   G          --U  AU
Stem-loop sequence	GACAUGUUUCAAUUUGCUGCAACGAUAACGUGGAAAAUUAUCACAAAACUGUAACUUUUACGUUAUAUGCUGUUACAGUUGUCACCUAUAUGUACUGUAGUAGGAUAAAACAUAAAAGUUGCAGUUUUAUGAUAAUUUCCCAUGUUAUCGUUUCAGCAAACUGAAACAUGUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015780608.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   ||||||||||||||||||||| targets:2279   GCGACAUGUUUCAGUUUGCUG   2299 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
XM_015767188.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   ||||=|||||||||||||||* targets:583   GCGAUAUGUUUCAGUUUGCUA   603 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767189.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   ||||=|||||||||||||||* targets:583   GCGAUAUGUUUCAGUUUGCUA   603 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X5, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767187.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   ||||=|||||||||||||||* targets:583   GCGAUAUGUUUCAGUUUGCUA   603 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015793456.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   *=|||||||*||||||||||| targets:1444   AUGACAUGUGUCAGUUUGCUG   1464 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mitogen-activated protein kinase kinase kinase NPK1 (LOC4345595), mRNA	mitogen-activated protein kinase kinase kinase NPK1(LOC4345595)	coding protein	psRNATarget
AK103087.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   *=|||||||*||||||||||| targets:1452   AUGACAUGUGUCAGUUUGCUG   1472 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033118I12, full insert sequence	NA	coding protein	psRNATarget
AK071080.1	ncRNA:21   CGCUGUACAAAGUCAAACGAC   1   *|*|==||||||||||||||| targets:2148   UCCAUGUGUUUCAGUUUGCUG   2168 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023078K06, full insert sequence	NA	coding protein	psRNATarget