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BaseInfo

ncRNA ID	novel_osa_miR1378
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27341178-27341283 [-]
Reference genome	IRGSP-1.0
Source	SRR1742996
Length	24
Mature sequence(if miRNA)	1 - AGAUGACAUGUAAUAAACGGGUGG - 24
Stem-loop(if miRNA)	--   UA                      A          U    UAUCUUGU   ACC  UUUAUUACAUGUCAUCUAAAUG UUAUGAAAAA UUUC        C   |||  |||||||||||||||||||||| |||||||||| ||||   UGG  AAAUAAUGUACAGUAGAUUUAU AAUGCUUUUU AAAG        A GG   GC                      C          U    UUUUUUUA
Stem-loop sequence	ACCUAUUUAUUACAUGUCAUCUAAAUGAUUAUGAAAAAUUUUCUAUCUUGUCAAUUUUUUUGAAAUUUUUUCGUAACUAUUUAGAUGACAUGUAAUAAACGGGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015774612.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   ||||||||||*||||||||||||| targets:1003   CCACCCGUUUUUUACAUGUCAUCU   1026 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332300 (LOC4332300), mRNA	uncharacterized LOC4332300(LOC4332300)	coding protein	psRNATarget
AK101982.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   ||||||||||*||=|||||||||| targets:479   CCACCCGUUUCUUGCAUGUCAUCU   502 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033078B17, full insert sequence	NA	coding protein	psRNATarget
AK107084.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   =|||||||||*||||||||||||| targets:1712   UCACCCGUUUCUUACAUGUCAUCU   1735 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-121-G02, full insert sequence	NA	coding protein	psRNATarget
XM_015781215.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   ||||||*||||||=|||||||||| targets:730   CCACCCAUUUAUUGCAUGUCAUCU   753 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA	putative beta-glucosidase 15(LOC107280799)	coding protein	psRNATarget
AK062865.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   ||||||||||*||=|||||||||| targets:498   CCACCCGUUUCUUGCAUGUCAUCU   521 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-108-B08, full insert sequence	NA	coding protein	psRNATarget
XM_015791299.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   *=*|=|*|||*||||||||||||| targets:1499   AUUCUCUUUUCUUACAUGUCAUCU   1522 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA	uncharacterized LOC4325522(LOC4325522)	coding protein	psRNATarget
AK108595.1	ncRNA:24   GGUGGGCAAAUAAUGUACAGUAGA   1   *=*|=|*|||*||||||||||||| targets:1384   AUUCUCUUUUCUUACAUGUCAUCU   1407 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence	NA	coding protein	psRNATarget