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BaseInfo

ncRNA ID	novel_osa_miR1374
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:35457200-35457265 [+]
Reference genome	IRGSP-1.0
Source	SRR1742996;SRR2040386;SRR2040389;SRR2040405;SRR2040409;SRR2040410;SRR2857729;SRR3123650;SRR5049780;SRR5049790;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AUAACAACUUUUAGCUAUGAAUCU - 24
Stem-loop(if miRNA)	--   A             UG         UAG   AUA CAACUUUUAGCUA  AAUCUGGAC   U   ||| |||||||||||||  |||||||||   UAU GUUGAAAAUCGAU  UUAGACCUG   G UA   C             GU         UAC
Stem-loop sequence	AUAACAACUUUUAGCUAUGAAUCUGGACUAGUGCAUGUCCAGAUUUGUAGCUAAAAGUUGCUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241902.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||||||||*||||||||||||| targets:503   AGAUUCAUAGGUAAAAGUUGUUAU   526 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075023P08, full insert sequence	NA	coding protein	psRNATarget
XM_015770646.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||||||||||||||*||||||| targets:2002   AGAUUCAUAGCUAAAAAUUGUUAU   2025 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 46, chloroplastic (LOC4328128), mRNA	protein DETOXIFICATION 46, chloroplastic(LOC4328128)	coding protein	psRNATarget
AK071927.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||||||||=||*|||||||||| targets:2041   AGAUUCAUAGUUACAAGUUGUUAU   2064 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013069M04, full insert sequence	NA	coding protein	psRNATarget
XM_015794033.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   |*||||||||||||||||||*||| targets:1077   AAAUUCAUAGCUAAAAGUUGCUAU   1100 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transmembrane protein 45B (LOC4345774), mRNA	transmembrane protein 45B(LOC4345774)	coding protein	psRNATarget
AK108845.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   |*||||||||||||||||||*||| targets:1061   AAAUUCAUAGCUAAAAGUUGCUAU   1084 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-152-A01, full insert sequence	NA	coding protein	psRNATarget
AK069934.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||*|*|||=|=||||||||||||| targets:826   AGUUACAUGGUUAAAAGUUGUUAU   849 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023035E16, full insert sequence	NA	coding protein	psRNATarget
CT832600.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||*|*|||=|=||||||||||||| targets:823   AGUUACAUGGUUAAAAGUUGUUAU   846 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118K04, full insert sequence	NA	coding protein	psRNATarget
XM_015757394.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||*|*|||=|=||||||||||||| targets:885   AGUUACAUGGUUAAAAGUUGUUAU   908 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4349216 (LOC4349216), mRNA	uncharacterized LOC4349216(LOC4349216)	coding protein	psRNATarget
AK103707.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||*|||||**|||||||||||| targets:1061   AGAUACAUAGACAAAAGUUGUUAU   1084 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||*|||||**|||||||||||| targets:1051   AGAUACAUAGACAAAAGUUGUUAU   1074 Target Full Sequence	2.5	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK287584.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||*|||||**|||||||||||| targets:1056   AGAUACAUAGACAAAAGUUGUUAU   1079 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   ||||*|||||**|||||||||||| targets:1079   AGAUACAUAGACAAAAGUUGUUAU   1102 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK106333.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   |*||*=|||||||||||||*|||| targets:1798   AAAUAUAUAGCUAAAAGUUAUUAU   1821 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015775041.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   |*||*=|||||||||||||*|||| targets:1864   AAAUAUAUAGCUAAAAGUUAUUAU   1887 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative transcription factor bHLH041 (LOC4326315), mRNA	putative transcription factor bHLH041(LOC4326315)	coding protein	psRNATarget
AK243674.1	ncRNA:24   UCUAAGUAUCGAUUUUCAACAAUA   1   |*||*=|||||||||||||*|||| targets:2428   AAAUAUAUAGCUAAAAGUUAUUAU   2451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100090C24, full insert sequence	NA	coding protein	psRNATarget
XM_015770683.1	ncRNA:24   UCUA--AGUAUCGAUUUUCAACAAUA   1   |*||--|=|*=||||||||||||||| targets:553   AAAUCCUUAGGGCUAAAAGUUGUUAU   578 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC107276977), mRNA	putative disease resistance RPP13-like protein 3(LOC107276977)	coding protein	psRNATarget