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BaseInfo

ncRNA ID	novel_osa_miR1373
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:27986783-27986953 [+]
Reference genome	IRGSP-1.0
Source	SRR1742996;SRR2040380
Length	24
Mature sequence(if miRNA)	1 - UUUUUACUUGCACUGUUUGAUCAC - 24
Stem-loop(if miRNA)	--     A      C                               -  G  U   UAUUUAUUUUU   AAAUUACUUUAUUAUCCAA   UUUUU CUUGCA UGUUUGAUCACUCGUCUUAUUCAAAAAAUUU UG AA UAU           UUU                   A   ||||| |||||| ||||||||||||||||||||||||||||||| || || |||           |||                   G   AAAAA GAAUGU ACAAACUGGUGAGCAGAAUAAGUUUUUUAAA AC UU AUA           UUG                   U UC     C      A                               C  G  U   -------UUUC   CUUUUCAACACGAAUUUCA
Stem-loop sequence	UUUUUACUUGCACUGUUUGAUCACUCGUCUUAUUCAAAAAAUUUUGGAAUUAUUAUUUAUUUUUUUUAAAUUACUUUAUUAUCCAAAGUACUUUAAGCACAACUUUUCGUUCUUUAUAUUUGCACAAAUUUUUUGAAUAAGACGAGUGGUCAAACAAUGUAAGCAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288846.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   ||||||||||||||||||*||||| targets:61   GUGAUCAAACAGUGCAAGCAAAAA   84 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
CT837708.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=||||||||||||||*||||| targets:672   GUGGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   *||=|||||||||||||||||||* targets:609   AUGGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=||||||=|||||||*||||| targets:813   GUGGUCAAACGGUGCAAGCAAAAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=||||||=|||||||*||||| targets:874   GUGGUCAAACGGUGCAAGCAAAAA   897 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK289013.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=|=||||||||||||*||||| targets:1531   GUGGUUAAACAGUGCAAGCAAAAA   1554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=||||||=*|||||||||||| targets:1852   GUGGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   |||=||||||||||||||*||||* targets:189   GUGGUCAAACAGUGCAAGCAAAAU   212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   *||=||||||||||||||*||||* targets:1428   AUGGUCAAACAGUGCAAGCAAAAU   1451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   CACUAGUUUGUCACGUUCAUUUUU   1   *||=||||||||||||||*||||* targets:1707   AUGGUCAAACAGUGCAAGCAAAAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget