ncRNA ID | novel_osa_miR1364 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:6450419-6450628 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742996 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUUGACAAGUGUGAGUUCCAAGAA - 24 |
Stem-loop(if miRNA) |
--                                       C                                    CA   AUUCCGC        AUACACU    AUC   AUUGACAAGUGUGAGUUCCAAGAAAUGCCAUCGUACAAG GAUUUUGUCCCAAAAAUGCCAUCGCCGUUAGGGUUC  UCC       GCCGUUAA       GUUC   C   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||       ||||||||       ||||   UAGCUGUUCACACUCAAGGUUCUUUACGGUAGCAUGUUU CUAAAACAGGGUUUUUACGGUAGCGGCAAUCCCAAG  AGG       UGGCAAUU       CAAG   U GG                                       A                                    AC   -------        -------    AUA |
Stem-loop sequence | AUUGACAAGUGUGAGUUCCAAGAAAUGCCAUCGUACAAGCGAUUUUGUCCCAAAAAUGCCAUCGCCGUUAGGGUUCCAUCCAUUCCGCGCCGUUAAAUACACUGUUCAUCCUAUAGAACUUAACGGUGGACAGAACCCUAACGGCGAUGGCAUUUUUGGGACAAAAUCAUUUGUACGAUGGCAUUUCUUGGAACUCACACUUGUCGAUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015769802.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328044 (LOC4328044), mRNA | uncharacterized LOC4328044(LOC4328044) | coding protein | psRNATarget |