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BaseInfo

ncRNA ID novel_osa_miR1364
Species Oryza sativa
Class miRNA
Genome position Chr12:6450419-6450628 [+]
Reference genome IRGSP-1.0
Source SRR1742996
Length 24
Mature sequence(if miRNA) 1 - AUUGACAAGUGUGAGUUCCAAGAA - 24
Stem-loop(if miRNA) --                                       C                                    CA   AUUCCGC        AUACACU    AUC
  AUUGACAAGUGUGAGUUCCAAGAAAUGCCAUCGUACAAG GAUUUUGUCCCAAAAAUGCCAUCGCCGUUAGGGUUC  UCC       GCCGUUAA       GUUC   C
  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||       ||||||||       ||||
  UAGCUGUUCACACUCAAGGUUCUUUACGGUAGCAUGUUU CUAAAACAGGGUUUUUACGGUAGCGGCAAUCCCAAG  AGG       UGGCAAUU       CAAG   U
GG                                       A                                    AC   -------        -------    AUA
Stem-loop sequence AUUGACAAGUGUGAGUUCCAAGAAAUGCCAUCGUACAAGCGAUUUUGUCCCAAAAAUGCCAUCGCCGUUAGGGUUCCAUCCAUUCCGCGCCGUUAAAUACACUGUUCAUCCUAUAGAACUUAACGGUGGACAGAACCCUAACGGCGAUGGCAUUUUUGGGACAAAAUCAUUUGUACGAUGGCAUUUCUUGGAACUCACACUUGUCGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015769802.1
ncRNA:24   AAG--------AACCUUGAGUGUGAACAGUUA   1
  |||--------|||*||||||*||||||||||
targets:6354   UUCGACAGAAGUUGAAACUCAGACUUGUCAAU   6385

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328044 (LOC4328044), mRNA uncharacterized LOC4328044(LOC4328044) coding protein psRNATarget