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BaseInfo

ncRNA ID novel_osa_miR1361
Species Oryza sativa
Class miRNA
Genome position Chr1:15015849-15015899 [+]
Reference genome IRGSP-1.0
Source SRR1742996
Length 22
Mature sequence(if miRNA) 1 - UUAUAAACCGGGACUAAAGAUC - 22
Stem-loop(if miRNA) --U  UA                 A
   UA  AACCGGGACUAAAGAUC A
   ||  ||||||||||||||||| G
   AU  UUGGCCCUGAUUUUUAG A
AUU  GC                 A
Stem-loop sequence UUAUAAACCGGGACUAAAGAUCAAGAAGAUUUUUAGUCCCGGUUCGUAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288224.1
ncRNA:22   CUAGAAAUCAGGGCCAAAUAUU   1
  |||||||||||||||||*||||
targets:1260   GAUCUUUAGUCCCGGUUGAUAA   1281

1.5 Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence NA coding protein psRNATarget
AK288496.1
ncRNA:22   CUAGAAAUCAGGGCCAAAUAUU   1
  **|=||||||||||||||*|||
targets:723   CUUUUUUAGUCCCGGUUUUUAA   744

2.5 Oryza sativa Japonica Group cDNA, clone: J090040O05, full insert sequence NA coding protein psRNATarget
XM_015783628.1
ncRNA:22   CUAGAAAUCAGGGCCAAAUAUU   1
  |*||||||*||||||||||*||
targets:2713   GCUCUUUACUCCCGGUUUAGAA   2734

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337524 (LOC4337524), mRNA uncharacterized LOC4337524(LOC4337524) coding protein psRNATarget