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BaseInfo

ncRNA ID	novel_osa_miR1354
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:4624786-4624970 [+]
Reference genome	IRGSP-1.0
Source	SRR1742996
Length	22
Mature sequence(if miRNA)	1 - UUCAGUUUUUGCUUGCAACGUU - 22
Stem-loop(if miRNA)	--UUC            C        A                         UC    AUAAAAAACGAAAAA     -    AAG  C   A      AGUUUUUGCUUG AACGUUUG CCACUCGUCUUAUUCAAAUUUUUUU  AAAU               UUGUG CUUA   UA UGU U      |||||||||||| |||||||| |||||||||||||||||||||||||  ||||               ||||| ||||   || ||| A      UCAAAAAUGAAC UUGCAAAC GGUGAGCAGAAUAAGUUUAAAAAAA  UUUA               AACAC GAAU   AU AUA U AAAAC            A        A                         -C    AUAAUUAAUAAAAUA     U    GAA  A   A
Stem-loop sequence	UUCAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUUCAAAUAUAAAAAACGAAAAAUUGUGCUUAAAGUACUGUAUAUAAUAAUAAAGUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAAAAAAAUUUGAAUAAGACGAGUGGACAAACGUUACAAGUAAAAACUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   |||||||||||||||||||*|| targets:1045   AACGUUGCAAGCAAAAACUCAA   1066 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   |||||||||||||||||||*|| targets:1985   AACGUUGCAAGCAAAAACUCAA   2006 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   |||||||||||||||||||*|| targets:2079   AACGUUGCAAGCAAAAACUCAA   2100 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
AK064773.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   |||||||||||||||||||*|| targets:3065   AACGUUGCAAGCAAAAACUCAA   3086 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||=||||||||||||||||*|| targets:164   AAUGUUGCAAGCAAAAACUCAA   185 Target Full Sequence	1.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
HI404548.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||=||||||||||||||||*|| targets:164   AAUGUUGCAAGCAAAAACUCAA   185 Target Full Sequence	1.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
JB165009.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||=||||||||||||||||*|| targets:164   AAUGUUGCAAGCAAAAACUCAA   185 Target Full Sequence	1.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015767968.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   |||||||=|||||||||||*|| targets:1591   AACGUUGUAAGCAAAAACUCAA   1612 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK289089.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||=||||||||||||||||*|| targets:1459   AAUGUUGCAAGCAAAAACUCAA   1480 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||=||||||||||||||||*|| targets:1920   AAUGUUGCAAGCAAAAACUCAA   1941 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
AK288595.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||||*||||||||||||||*|| targets:820   AACGGUGCAAGCAAAAACUCAA   841 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   ||||*||||||||||||||*|| targets:881   AACGGUGCAAGCAAAAACUCAA   902 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
XM_015777066.1	ncRNA:22   UUGCAACGUUCGUUUUUGACUU   1   **=|||||||*||||||||||* targets:2   UCUGUUGCAACCAAAAACUGAU   23 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 11 (LOC4331572), mRNA	cysteine-rich repeat secretory protein 11(LOC4331572)	coding protein	psRNATarget