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BaseInfo

ncRNA ID	novel_osa_miR1352
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8487719-8487862 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	23
Mature sequence(if miRNA)	122 - CUCCGUUUCAAGUUAUAAGACUU - 144
Stem-loop(if miRNA)	--                          A                                   U    CAU   CUCCGUUUCAAGUUAUAAGACUUUCU GCAUUGCCCACAUUCAUAUAUAUGUUAAUGAAUCU GGCA   A   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||   GAGGCAAAGUUCAAUAUUCUGAAAGA CGUAACGGGUGUAAGUAUAUAUACAAUUAUUUAGA CUGU   U AG                          C                                   U    AUA
Stem-loop sequence	CUCCGUUUCAAGUUAUAAGACUUUCUAGCAUUGCCCACAUUCAUAUAUAUGUUAAUGAAUCUUGGCACAUAUAUAUGUCUAGAUUUAUUAACAUAUAUAUGAAUGUGGGCAAUGCCAGAAAGUCUUAUAACUUGAAACGGAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK119273.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |||||||||||=||||||||||| targets:2406   AAGUCUUAUAAUUUGAAACGGAG   2428 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-130-B05, full insert sequence	NA	coding protein	psRNATarget
XM_015757710.1	ncRNA:23   UU-CAGAAUAUUGAACUUUGCCUC   1   ||-||||||||||||||||||||| targets:62   AACGUCUUAUAACUUGAAACGGAG   85 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK107726.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   ||||||||||||*|||||||||| targets:421   AAGUCUUAUAACCUGAAACGGAG   443 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-132-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015794062.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   ||||||||||||*|||||||||| targets:1019   AAGUCUUAUAACCUGAAACGGAG   1041 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor AIG1 (LOC4345836), mRNA	transcription factor AIG1(LOC4345836)	coding protein	psRNATarget
XM_015764678.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   ||||||||||||*|||||||||| targets:1702   AAGUCUUAUAACCUGAAACGGAG   1724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
AK120530.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   ||||||||||||*|||||||||| targets:1908   AAGUCUUAUAACCUGAAACGGAG   1930 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013127H10, full insert sequence	NA	coding protein	psRNATarget
AK120847.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |||||||=||||*|||||||||| targets:615   AAGUCUUGUAACCUGAAACGGAG   637 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023023A10, full insert sequence	NA	coding protein	psRNATarget
AK072372.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |||||||=||||*|||||||||| targets:770   AAGUCUUGUAACCUGAAACGGAG   792 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023068F06, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:23   UU-CAGAAUAUUGAACUUUGCCUC   1   ||-||||||||||*|||||||||| targets:1418   AACGUCUUAUAACCUGAAACGGAG   1441 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
AK288313.1	ncRNA:23   UU-CAGAAUAUUGAACUUUGCCUC   1   ||-||||||||||*|||||||||* targets:1048   AACGUCUUAUAACCUGAAACGGAA   1071 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
AK100473.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |**|||||||||*|||||||||| targets:1359   ACUUCUUAUAACCUGAAACGGAG   1381 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence	NA	coding protein	psRNATarget
AK071758.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |***||||||||*|||||||||| targets:1141   ACCCCUUAUAACCUGAAACGGAG   1163 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence	NA	coding protein	psRNATarget
XM_015792379.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   |***||||||||*|||||||||| targets:1153   ACCCCUUAUAACCUGAAACGGAG   1175 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA	uncharacterized protein At4g14100(LOC4342613)	coding protein	psRNATarget
AK288934.1	ncRNA:23   UUCAGAAUAUUGAACUUUGCCUC   1   =||**|||||||*|||||||||| targets:1242   GAGAAUUAUAACAUGAAACGGAG   1264 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082I21, full insert sequence	NA	coding protein	psRNATarget