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BaseInfo

ncRNA ID	novel_osa_miR1350
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:17865768-17865820 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	24
Mature sequence(if miRNA)	1 - AGUACCAACCGGGACUAAAGAUCU - 24
Stem-loop(if miRNA)	A    ---         C        U  GUAC   CAACCGGGA UAAAGAUC A  ||||   ||||||||| |||||||| A  CAUG   GUUGGCCCU AUUUCUAG G -    AUA         U        U
Stem-loop sequence	AGUACCAACCGGGACUAAAGAUCUAAGUGAUCUUUAUUCCCGGUUGAUAGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   ||||||||||||||||||||||** targets:237   AGAUCUUUAGUCCCGGUUGGUAAC   260 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||||||||||||||=| targets:1907   CGAUCUUUAGUCCCGGUUGGUAUU   1930 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   =|||||||||||||||||||||** targets:1699   GGAUCUUUAGUCCCGGUUGGUAAC   1722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||||||||||||||** targets:142   UGAUCUUUAGUCCCGGUUGGUAAC   165 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288734.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||||||||||||||** targets:46   UGAUCUUUAGUCCCGGUUGGUAAC   69 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
HI404518.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||*||||||||||=|| targets:42   UGAUCUUUAGCCCCGGUUGGUGCU   65 Target Full Sequence	2.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
JB164979.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||*||||||||||=|| targets:42   UGAUCUUUAGCCCCGGUUGGUGCU   65 Target Full Sequence	2.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   *|||||||||*||||||||||=|| targets:42   UGAUCUUUAGCCCCGGUUGGUGCU   65 Target Full Sequence	2.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAU-GA   1   |*||||||||||||||||||||-|| targets:2362   AAAUCUUUAGUCCCGGUUGGUAACU   2386 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   **||||||||||||||||||||=* targets:928   UAAUCUUUAGUCCCGGUUGGUAUG   951 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   **||||||||||||||||||||=* targets:1373   UUAUCUUUAGUCCCGGUUGGUAUA   1396 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288598.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   =||-||||||||||||||||||** targets:943   GGA-CUUUAGUCCCGGUUGGUAAG   965 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   |*||||||||||||||||||||** targets:1904   AAAUCUUUAGUCCCGGUUGGUAGC   1927 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCUAGAAAUCAGGGCCAACCAUGA   1   **||||||||*|||||||||||*| targets:1368   CCAUCUUUAGCCCCGGUUGGUAAU   1391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget