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BaseInfo

ncRNA ID novel_osa_miR1348
Species Oryza sativa
Class miRNA
Genome position Chr1:9247502-9247599 [-]
Reference genome IRGSP-1.0
Source SRR1742995
Length 24
Mature sequence(if miRNA) 1 - AUGAAUAUAGUCAAUGCUAGAAAG - 24
Stem-loop(if miRNA) --          -   CAC         A               A    A
  UUCUAGCAUU ACU   AUUCAUAUA AUGUUAAUGAAUCUA ACAU U
  |||||||||| |||   ||||||||| ||||||||||||||| ||||
  AAGAUCGUAA UGA   UAAGUAUAU UACGAUUACUUAGAU UGUG A
GA          C   -UA         C               A    U
Stem-loop sequence UUCUAGCAUUACUCACAUUCAUAUAAAUGUUAAUGAAUCUAAACAUAUAUGUGUAUAGAUUCAUUAGCAUCUAUAUGAAUAUAGUCAAUGCUAGAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK067363.1
ncRNA:24   GAAAGAUCGUAACUGAUAUAAGUA   1
  ||||=||||||||*|||||||||*
targets:967   CUUUUUAGCAUUGUCUAUAUUCAA   990

2.5 Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence NA coding protein psRNATarget
XM_015786027.1
ncRNA:24   GAAAGAUCGUAACUGAUAUAAGUA   1
  |*|||||||||||*|||||||||*
targets:4281   CCUUCUAGCAUUGCCUAUAUUCAG   4304

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget