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BaseInfo

ncRNA ID	novel_osa_miR1343
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:20429230-20429394 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	24
Mature sequence(if miRNA)	142 - UUUGUCCAACGUUUGACUGUUCGU - 165
Stem-loop(if miRNA)	--    U C                 C          AA      UG U   -CAUU     -UA     A     UUCGUCAU   UUUG C AACGUUUGACUGUUCGU UUAUUCAAAA  UUUAUG  A UAU     UAUUU   UUAUG CUUGA        C   |||| | ||||||||||||||||| ||||||||||  ||||||  | |||     |||||   ||||| |||||   AAGC G UUGCAAACUGAUAAGUA AAUAAGUUUU  AAAUAC  U AUA     AUAAA   AAUAC GAAUU        A AA    U A                 A          AA      GU U   CUUUU     UAC     -     UCUUAUAA
Stem-loop sequence	UUUGUCCAACGUUUGACUGUUCGUCUUAUUCAAAAAAUUUAUGUGAUUAUCAUUUAUUUUAUUAUGACUUGAUUCGUCAUCAAAUAUUCUUUAAGCAUAACAUAAAUAUUUUCAUAUUUGCAUAAAAAUUUUGAAUAAAAUGAAUAGUCAAACGUUAGUCGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288290.1	ncRNA:24   UGCUUGUCAGUUUGCAACCUGUUU   1   |||||==||=|||||||||||||| targets:1750   ACGAAUGGUUAAACGUUGGACAAA   1773 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:24   UGCUUGUCAGUUUGCAACCUGUUU   1   |=|||=|||||||||||||*|||| targets:172   AUGAAUAGUCAAACGUUGGUCAAA   195 Target Full Sequence	2.5	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
JB164475.1	ncRNA:24   UGCUUGUCAGUUUGCAACCUGUUU   1   |=|||=|||||||||||||*|||| targets:172   AUGAAUAGUCAAACGUUGGUCAAA   195 Target Full Sequence	2.5	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
HI404014.1	ncRNA:24   UGCUUGUCAGUUUGCAACCUGUUU   1   |=|||=|||||||||||||*|||| targets:172   AUGAAUAGUCAAACGUUGGUCAAA   195 Target Full Sequence	2.5	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015761929.1	ncRNA:24   UGCUUGUCAGUUUGCAACCUGUUU   1   |||=||=|||||||||||||||*| targets:23   ACGGACGGUCAAACGUUGGACACA   46 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4350187)	coding protein	psRNATarget