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BaseInfo

ncRNA ID novel_osa_miR1335
Species Oryza sativa
Class miRNA
Genome position Chr8:27189068-27189161 [+]
Reference genome IRGSP-1.0
Source SRR1742995
Length 24
Mature sequence(if miRNA) 71 - AUAUCUUGUUAGAUUCGUCUCACA - 94
Stem-loop(if miRNA) --C         A            C   C C   U  A  GGAUGA
   GAGACGAAU UAACGAGGUAUA UAA C AUG UU GC      U
   ||||||||| |||||||||||| ||| | ||| || ||
   CUCUGCUUA AUUGUUCUAUAU AUU G UAC AA CG      U
ACA         G            A   A A   U  A  AUGUUA
Stem-loop sequence CGAGACGAAUAUAACGAGGUAUACUAACCCAUGUUUAGCGGAUGAUUAUUGUAGCAAAUCAUAGAUUAAUAUAUCUUGUUAGAUUCGUCUCACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015762321.1
ncRNA:24   ACAC--UCUGCUUAGAUUGUUCUAUA   1
  |*||--|||||||||||||=||||||
targets:989   UUUGCAAGACGAAUCUAACGAGAUAU   1014

1.5 PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA transcription initiation factor TFIID subunit 13(LOC9268703) coding protein psRNATarget