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BaseInfo

ncRNA ID	novel_osa_miR1333
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:24007112-24007307 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR1743002;SRR2040405;SRR3234043
Length	24
Mature sequence(if miRNA)	173 - ACUUAGAGUAGUUUGACUUUGACC - 196
Stem-loop(if miRNA)	--     A                 UUUCUAAGUU       CUCUA    C            AA      CA  A        --    CAUUAAACCUAUAAU   UCGAA UCAAACUACUCUAAGUU          UGACUAA     UAGA AAAAGUAGUAGU  UAUUUA  AC CUAGCAUA  GUUU               U   ||||| |||||||||||||||||          |||||||     |||| ||||||||||||  ||||||  || ||||||||  ||||   AGUUU AGUUUGAUGAGAUUCAA          ACUGAUU     AUCU UUUUCAUCAUUA  AUAAAU  UG GGUUGUAU  AUAU               G CC     C                 ----------       AAAAC    U            -C      --  -        UU    AAUACUUUUAAAUAA
Stem-loop sequence	UCGAAAUCAAACUACUCUAAGUUUUUCUAAGUUUGACUAACUCUAUAGACAAAAGUAGUAGUAAUAUUUACAACACUAGCAUAGUUUCAUUAAACCUAUAAUUGAAUAAAUUUUCAUAAUAUAUUUAUGUUGGGUUAAAUACAUUACUACUUUUUUCUACAAAAUUAGUCAAACUUAGAGUAGUUUGACUUUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404428.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |||||||*|||||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAAGU   48 Target Full Sequence	1.0	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236558.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |||||||*|||||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAAGU   48 Target Full Sequence	1.0	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
JB164889.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |||||||*|||||||||||||||| targets:25   GGUCAAAUUCAAACUACUCUAAGU   48 Target Full Sequence	1.0	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |*|||||||||||||||||||||| targets:294   GUUCAAAGUCAAACUACUCUAAGU   317 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
AK288527.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |||=||||||||||||||||*||| targets:599   GGUUAAAGUCAAACUACUCUUAGU   622 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
XM_015793379.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   **||||||||||||||=||||||| targets:1800   AAUCAAAGUCAAACUAUUCUAAGU   1823 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
XM_015783559.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   *||=||||||*|||||=||||||| targets:550   AGUUAAAGUCCAACUAUUCUAAGU   573 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277099 (LOC107277099), mRNA	uncharacterized LOC107277099(LOC107277099)	coding protein	psRNATarget
CT835003.1	ncRNA:24   CCAGUUUCAGUUUGAUGAGAUUCA   1   |*|=*||*|||||||||||||||| targets:193   GAUUUAACUCAAACUACUCUAAGU   216 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget