Search result

BaseInfo

ncRNA ID	novel_osa_miR1329
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:10033533-10033688 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR5351742
Length	23
Mature sequence(if miRNA)	1 - UCAAGGACCGUAAAAUUGCUCUU - 23
Stem-loop(if miRNA)	--        C   U                      AUA  --AAAA     -GUG     UU           A    C   GAGCAAUU UAC GUCCUUGAGGAGGUAUCAUGAG   CC      UUUUA    UAAAU  UGGUACCUCAU GUAC U   |||||||| ||| ||||||||||||||||||||||   ||      |||||    |||||  ||||||||||| ||||   CUCGUUAA AUG CAGGAACUCUUCCAUGGUAUUU   GG      AAGAU    AUUUA  ACCAUGGAGUA CAUG A UU        A   C                      -CA  AUAAAA     AAUA     --           A    G
Stem-loop sequence	GAGCAAUUCUACUGUCCUUGAGGAGGUAUCAUGAGAUACCAAAAUUUUAGUGUAAAUUUUGGUACCUCAUAGUACCUAGGUACAAUGAGGUACCAAUUUAAUAAUAGAAAAAAUAGGACUUUAUGGUACCUUCUCAAGGACCGUAAAAUUGCUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015791346.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   =||||=||||||||||||||||| targets:2400   GAGAGUAAUUUUACGGUCCUUGA   2422 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA	cysteine-rich receptor-like protein kinase 10(LOC4343479)	coding protein	psRNATarget
AK288954.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   *||||||||||||||||=||||| targets:3530   CAGAGCAAUUUUACGGUUCUUGA   3552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence	NA	coding protein	psRNATarget
AK066407.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   **|||||||||||||||=||||| targets:3811   UUGAGCAAUUUUACGGUUCUUGA   3833 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063J08, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   *||||*||||||||||||||||| targets:3833   UAGAGGAAUUUUACGGUCCUUGA   3855 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288582.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   *=|||||||||||=||||||||* targets:2811   UGGAGCAAUUUUAUGGUCCUUGU   2833 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
AK288182.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   |*||||||||||||*|||||||| targets:1286   AUGAGCAAUUUUACUGUCCUUGA   1308 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
XM_015774311.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   =|*||||||||||||||*||||| targets:2712   GAUAGCAAUUUUACGGUACUUGA   2734 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333352 (LOC4333352), mRNA	uncharacterized LOC4333352(LOC4333352)	coding protein	psRNATarget
XM_015786027.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   ***|||||||*|||||||||||| targets:4595   UUAAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015760251.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   **|||||*||||||*|||||||| targets:35   UUGAGCAUUUUUACUGUCCUUGA   57 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107279278), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107279278)	coding protein	psRNATarget
XM_015782488.1	ncRNA:23   UUCUCGUUAAAAUGCCAGGAACU   1   **|**|||||||||*|||||||| targets:1967   UUGCUCAAUUUUACAGUCCUUGA   1989 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g14170 (LOC4338774), mRNA	pentatricopeptide repeat-containing protein At4g14170(LOC4338774)	coding protein	psRNATarget