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BaseInfo

ncRNA ID	novel_osa_miR1326
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:10969531-10969643 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	24
Mature sequence(if miRNA)	1 - AAACAUACAAGUUCAAAUUCGACU - 24
Stem-loop(if miRNA)	--                   C        G                        A   AAACAUACAAGUUCAAAUU GACUUCUA AAGUUGUAACAAAAAUAACAAAUU G   ||||||||||||||||||| |||||||| |||||||||||||||||||||||| U   UUUGUAUGUUCAAGUUUAA CUGAAGAU UUCAACAUUGUUUUUAUUGUUUAA U UG                   A        G                        A
Stem-loop sequence	AAACAUACAAGUUCAAAUUCGACUUCUAGAAGUUGUAACAAAAAUAACAAAUUAGUUAAAUUUGUUAUUUUUGUUACAACUUGUAGAAGUCAAAUUUGAACUUGUAUGUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404353.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=|||||||||||||||||||| targets:132   AGUUGAAUUUGAACUUGUAUGUUU   155 Target Full Sequence	0.0	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=|||||||||||||||||||| targets:132   AGUUGAAUUUGAACUUGUAUGUUU   155 Target Full Sequence	0.0	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
JB164814.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=|||||||||||||||||||| targets:132   AGUUGAAUUUGAACUUGUAUGUUU   155 Target Full Sequence	0.0	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015788270.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||||||||||||||||*|||||| targets:336   AGUCGAAUUUGAACUUGCAUGUUU   359 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X1, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
XM_015788271.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||||||||||||||||*|||||| targets:336   AGUCGAAUUUGAACUUGCAUGUUU   359 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X2, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
XM_015762434.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=|||||||||||||*|||||| targets:919   AGUUGAAUUUGAACUUGCAUGUUU   942 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762405.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=|||||||||||||*|||||| targets:852   AGUUGAAUUUGAACUUGCAUGUUU   875 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015789704.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   ||||*|||||||=||||||||||| targets:1486   AGUCUAAUUUGAGCUUGUAUGUUU   1509 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative transcription factor bHLH041 (LOC4327324), mRNA	putative transcription factor bHLH041(LOC4327324)	coding protein	psRNATarget
AK241705.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=||||||*||||||*|||||| targets:3110   AGUUGAAUUUUAACUUGCAUGUUU   3133 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK107231.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=||||||*||||*|||||||| targets:1348   AGUUGAAUUUUAACUCGUAUGUUU   1371 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-E04, full insert sequence	NA	coding protein	psRNATarget
JB164690.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |*|=||*||||||||||||||||| targets:128   AAUUGAUUUUGAACUUGUAUGUUU   151 Target Full Sequence	1.0	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |*|=||*||||||||||||||||| targets:128   AAUUGAUUUUGAACUUGUAUGUUU   151 Target Full Sequence	1.0	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
HI404229.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |*|=||*||||||||||||||||| targets:128   AAUUGAUUUUGAACUUGUAUGUUU   151 Target Full Sequence	1.0	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
CT833231.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   |||=*|||||**|||||||||||| targets:1280   AGUUAAAUUUUUACUUGUAUGUUU   1303 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053D08, full insert sequence	NA	coding protein	psRNATarget
XM_015792085.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   ***=||=*|||||||||||||||* targets:1597   CAAUGAGAUUGAACUUGUAUGUUC   1620 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group elongator complex protein 1 (LOC4343611), mRNA	elongator complex protein 1(LOC4343611)	coding protein	psRNATarget
AK121078.1	ncRNA:24   UCAGCUUAAACUUGAACAUACAAA   1   ***=||=*|||||||||||||||* targets:1603   CAAUGAGAUUGAACUUGUAUGUUC   1626 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023062J19, full insert sequence	NA	coding protein	psRNATarget