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BaseInfo

ncRNA ID novel_osa_miR1319
Species Oryza sativa
Class miRNA
Genome position Chr6:6145837-6145894 [-]
Reference genome IRGSP-1.0
Source SRR1742995
Length 24
Mature sequence(if miRNA) 35 - CACGGAUCCUCUGCAGUACUGCAC - 58
Stem-loop(if miRNA) -CA   A   -    -    -     -  U
   CGG UCC UCUG CAGU ACUGC AC U
   ||| ||| |||| |||| ||||| || G
   GCC AGG GGAC GUCG UGACG UG C
CUG   C   U    A    G     A  A
Stem-loop sequence CACGGAUCCUCUGCAGUACUGCACUUGCAGUAGCAGUGGCUGACAGGUGGACCCGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015769868.1
ncRNA:24   CACGUCAUGACGUCUCCUAGGCAC   1
  ||*||||*|||||*||||||||||
targets:11311   GUUCAGUCCUGCAAAGGAUCCGUG   11334

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329342 (LOC4329342), transcript variant X2, mRNA uncharacterized LOC4329342(LOC4329342) coding protein psRNATarget
XM_015769867.1
ncRNA:24   CACGUCAUGACGUCUCCUAGGCAC   1
  ||*||||*|||||*||||||||||
targets:12596   GUUCAGUCCUGCAAAGGAUCCGUG   12619

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329342 (LOC4329342), transcript variant X1, mRNA uncharacterized LOC4329342(LOC4329342) coding protein psRNATarget