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BaseInfo

ncRNA ID novel_osa_miR1313
Species Oryza sativa
Class miRNA
Genome position Chr11:1116049-1116121 [-]
Reference genome IRGSP-1.0
Source SRR1742995
Length 24
Mature sequence(if miRNA) 1 - GAUGUCACAUACCGUACUAGAUAG - 24
Stem-loop(if miRNA) --AC       U A    A       CA  U   AC
    CUAGUAC G AUGU ACAUCAU  CC AGU  U
    ||||||| | |||| |||||||  || |||  A
    GAUCAUG C UACA UGUAGUG  GG UUA  U
GAUA       C A    C       CA  U   AG
Stem-loop sequence ACCUAGUACUGAAUGUAACAUCAUCACCUAGUACUAUGAAUUUGGACGUGAUGUCACAUACCGUACUAGAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015788811.1
ncRNA:24   GAUAGAUCAUGCCAUACACUGUAG   1
  |||*|||||||||*|||||||||=
targets:847   CUACCUAGUACGGGAUGUGACAUU   870

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277009 (LOC107277009), transcript variant X1, mRNA uncharacterized LOC107277009(LOC107277009) coding protein psRNATarget