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BaseInfo

ncRNA ID	novel_osa_miR1307
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:41315369-41315468 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	1 - AAAACAGAGGAAUAGGAAAAACAU - 24
Stem-loop(if miRNA)	--                CA        AC             U     C   GUUUUUCCUAUUCCUC  UUUUUUCA  CCUGUGAUUCAAA GGGCC U   ||||||||||||||||  ||||||||  ||||||||||||| |||||   CAAAAAGGAUAAGGAG  AAAAAAGU  GGAUGCUAAGUUU CCCGG A UA                AC        AA             C     G
Stem-loop sequence	GUUUUUCCUAUUCCUCCAUUUUUUCAACCCUGUGAUUCAAAUGGGCCCUAGGGCCCCUUUGAAUCGUAGGAAUGAAAAAACAGAGGAAUAGGAAAAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794774.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   =||||||||||||||||=|||||| targets:1403   GUGUUUUUCCUAUUCCUUUGUUUU   1426 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group kynurenine formamidase (LOC4345252), transcript variant X1, mRNA	kynurenine formamidase(LOC4345252)	coding protein	psRNATarget
XM_015794775.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   =||||||||||||||||=|||||| targets:1400   GUGUUUUUCCUAUUCCUUUGUUUU   1423 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group kynurenine formamidase (LOC4345252), transcript variant X2, mRNA	kynurenine formamidase(LOC4345252)	coding protein	psRNATarget
XM_015759996.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*|||||||||||||||||||||| targets:785   ACGUUUUUCCUAUUCCUCUGUUUU   808 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279261 (LOC107279261), transcript variant X3, mRNA	uncharacterized LOC107279261(Os11g0138000)	coding protein	psRNATarget
XM_015785808.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   =|||||||||||||||||*||||| targets:580   GUGUUUUUCCUAUUCCUCCGUUUU   603 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g48730, chloroplastic (LOC4340271), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g48730, chloroplastic(LOC4340271)	coding protein	psRNATarget
XM_015760275.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*|||||||=|||||||||||||| targets:138   ACGUUUUUCUUAUUCCUCUGUUUU   161 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4350886), mRNA	disease resistance RPP13-like protein 4(LOC4350886)	coding protein	psRNATarget
AK106598.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   =|||||||||||||||||*||||| targets:1612   GUGUUUUUCCUAUUCCUCCGUUUU   1635 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-112-A12, full insert sequence	NA	coding protein	psRNATarget
AK106598.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   =*|||||||||||||||*|||||| targets:1930   GCGUUUUUCCUAUUCCUAUGUUUU   1953 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-112-A12, full insert sequence	NA	coding protein	psRNATarget
AK070524.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*|||||||||||||||=|||||* targets:1607   ACGUUUUUCCUAUUCCUUUGUUUG   1630 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023055G02, full insert sequence	NA	coding protein	psRNATarget
AK070524.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*||||||*||||||||*|||||| targets:1700   ACGUUUUUACUAUUCCUGUGUUUU   1723 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023055G02, full insert sequence	NA	coding protein	psRNATarget
AK288502.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*||||||||||||||||*||||| targets:1048   ACGUUUUUCCUAUUCCUCCGUUUU   1071 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
CT837837.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   ||*|||||=|||||||||*||||| targets:1348   AUAUUUUUUCUAUUCCUCCGUUUU   1371 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129N04, full insert sequence	NA	coding protein	psRNATarget
XM_015775042.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*|||||||*|||||||*|||||| targets:693   ACGUUUUUCAUAUUCCUGUGUUUU   716 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X1, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015775044.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   |*|||||||*|||||||*|||||| targets:693   ACGUUUUUCAUAUUCCUGUGUUUU   716 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X3, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015773827.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   *|*||||||||*|||||||||||* targets:46   UUUUUUUUCCUCUUCCUCUGUUUC   69 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase II-3 (LOC4331912), mRNA	serine carboxypeptidase II-3(LOC4331912)	coding protein	psRNATarget
AK064747.1	ncRNA:24   UACAAAAAGGAUAAGGAGACAAAA   1   *|*||||||||*|||||||||||* targets:14   UUUUUUUUCCUCUUCCUCUGUUUC   37 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-120-E08, full insert sequence	NA	coding protein	psRNATarget