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BaseInfo

ncRNA ID	novel_osa_miR1305
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27518702-27518875 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995;SRR2040382;SRR2040383;SRR2040384;SRR2040385;SRR2040386;SRR2040388;SRR2040390;SRR2040391;SRR2040392;SRR2040394;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040410;SRR3123630;SRR3123645;SRR3123650;SRR1738225;SRR1738226;SRR1738239;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - AUUUUCGUAUCCAACUUUGACUGU - 24
Stem-loop(if miRNA)	--A       A  C   -           A      A     UUUUU      UUCAU   -UUCAUUGUU    G  G         A    UUUUCGU UC AAC UUUGACUGUCC UUUUAU UGAAA     UUAUAA     AUU          GUUA AU AUAAAAUAU A    ||||||| || ||| ||||||||||| |||||| |||||     ||||||     |||          |||| || ||||||||| U    AAAGGCA AG UUG AAACUGGCAGG AGAAUA ACUUU     AAUAUU     UAA          CAGU UG UAUUUUAUA U ACC       C  A   C           C      A     --UUU      UUUUU   UUUUUCUGUU    G  -         A
Stem-loop sequence	AUUUUCGUAUCCAACUUUGACUGUCCAUUUUAUAUGAAAUUUUUUUAUAAUUCAUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUAAUUAAUAUUUUAUGUGUGACUUGUCUUUUUAAUUUUUUUUAUAAUUUUUUCAAAUAAGACGGACGGUCAAACGUUAGACACGGAAACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065455.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||||||||||* targets:3096   ACAGUCAAAGUUGGAUACGAAAAC   3119 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
AK242028.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||*|||||||| targets:1620   ACAGUCAAAGUUGGACACGAAAAU   1643 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||*|||||||| targets:1731   ACAGUCAAAGUUGGACACGAAAAU   1754 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||*|||||||| targets:1737   ACAGUCAAAGUUGGACACGAAAAU   1760 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||*|||||||| targets:1743   ACAGUCAAAGUUGGACACGAAAAU   1766 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK071213.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||||||*|||* targets:1118   ACAGUCAAAGUUGGAUACGCAAAC   1141 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence	NA	coding protein	psRNATarget
XM_015757480.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||||||*|||* targets:1168   ACAGUCAAAGUUGGAUACGCAAAC   1191 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA	uncharacterized LOC4348155(LOC4348155)	coding protein	psRNATarget
AK100367.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |||||||||||||||||||*|||* targets:1118   ACAGUCAAAGUUGGAUACGCAAAC   1141 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   UGUCAGUUUCAACCUAUGCUUUUA   1   |==*|||||||||||||||||||* targets:2311   AUGAUCAAAGUUGGAUACGAAAAA   2334 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget