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BaseInfo

ncRNA ID	novel_osa_miR1299
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:8395150-8395321 [-]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	22
Mature sequence(if miRNA)	151 - UUUUUGCUUAUAACGUUUGACC - 172
Stem-loop(if miRNA)	--             C            G           UUUUU    C    AUAAAAAAUGAAAAG     -    AAG  C  U   UUUUUGCUUAUAA GUUUGACCACUC UCUUAUUCAAA     UUUG AAAU               UUGUG CUUA   UA UG A   ||||||||||||| |||||||||||| |||||||||||     |||| ||||               ||||| ||||   || ||   AAAAAUGAAUGUU CAAACUGGUGAG AGAAUAAGUUU     AAAC UUUA               AACAC GAAU   AU AU G UC             A            G           --UUU    -    AUAAUAAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUUUUGCUUAUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUUGCAAAUAUAAAAAAUGAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAUUUUUUGAAUAAGAGGAGUGGUCAAACAUUGUAAGUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767620.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   |||||||||||=|||||||||| targets:1977   GGUCAAACGUUGUAAGCAAAAA   1998 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA	uncharacterized LOC4324862(LOC4324862)	coding protein	psRNATarget
XM_015772731.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   |||||||=|||||||||||||| targets:342   GGUCAAAUGUUAUAAGCAAAAA   363 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 6.1 (LOC4326444), mRNA	protein NRT1/ PTR FAMILY 6.1(LOC4326444)	coding protein	psRNATarget
AK289081.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   |||||||||||=|||||||||| targets:2991   GGUCAAACGUUGUAAGCAAAAA   3012 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence	NA	coding protein	psRNATarget
XM_015767968.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   *||||||||||=|||||||||| targets:1586   AGUCAAACGUUGUAAGCAAAAA   1607 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK288846.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   *|||||||*||=|||||||||| targets:1381   AGUCAAACAUUGUAAGCAAAAA   1402 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK067370.1	ncRNA:22   CCAGUUUGCAAUAUUCGUUUUU   1   ||||||||**|||||||||||| targets:1084   GGUCAAACACUAUAAGCAAAAA   1105 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013105M23, full insert sequence	NA	coding protein	psRNATarget