Search result

BaseInfo

ncRNA ID	novel_osa_miR1293
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:34566795-34567005 [+]
Reference genome	IRGSP-1.0
Source	SRR1742995
Length	20
Mature sequence(if miRNA)	1 - UUAAUGUAUAACGUCGUUGA - 20
Stem-loop(if miRNA)	--         A                AUG                  C           AA  A     U   -----       UUUA UG  A     --UU   CA   UUAAUGUAU ACGUCGUUGAUUUUUU   CAACGUUUGACCAUUCGU UUAUUUAAAAA  UU UGUAA UAU     CAUUUAU    U  UG CUUGA    CAU  U   ||||||||| ||||||||||||||||   |||||||||||||||||| |||||||||||  || ||||| |||     |||||||    |  || |||||    |||   AAUUACAUA UGCGGCAACUGAAAAA   GUUGCAAACUGGUAAGCA AAUAAGUUUUU  AA ACGUU AUA     GUAAAUA    A  AC GAAUU    GUA  C AA         C                CCG                  A           AA  C     U   CUUUU       ---C GU  -     UCUU   AA
Stem-loop sequence	UUAAUGUAUAACGUCGUUGAUUUUUUAUGCAACGUUUGACCAUUCGUCUUAUUUAAAAAAAUUAUGUAAUUAUCAUUUAUUUUAUUGUGACUUGAUUCAUCAUCAAAUGUUCUUUAAGCAUGACAUAAAUGUUUUCAUAUUUGCACAAAAUUUUUGAAUAAAACGAAUGGUCAAACGUUGGCCAAAAAGUCAACGGCGUCAUACAUUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015768863.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=||||||||||||| targets:238   UCAACGGCGUUAUACAUUAA   257 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK288521.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=||||||||||||| targets:244   UCAACGGCGUUAUACAUUAA   263 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget
AK068361.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||||||*||||||||| targets:765   UCAACGACGUCAUACAUUAA   784 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:860   UCAACGGCGUCAUACAUUAA   879 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015792366.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:867   UCAACGGCGUCAUACAUUAA   886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:875   UCAACGGCGUCAUACAUUAA   894 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
XM_015763290.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1295   UCAACGGCGUCAUACAUUAA   1314 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein YnbD-like (LOC107279577), transcript variant X3, mRNA	uncharacterized protein YnbD-like(LOC107279577)	coding protein	psRNATarget
XM_015786574.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1661   UCAACGGCGUCAUACAUUAA   1680 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AAA-ATPase At3g50940 (LOC4341947), mRNA	AAA-ATPase At3g50940(LOC4341947)	coding protein	psRNATarget
AK066336.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1796   UCAACGGCGUCAUACAUUAA   1815 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence	NA	coding protein	psRNATarget
XM_015756907.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1788   UCAACGGCGUCAUACAUUAA   1807 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA	probable inactive beta-glucosidase 33(LOC4347547)	coding protein	psRNATarget
AK288901.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||=|||||*||||||||| targets:472   UCAAUGACGUCAUACAUUAA   491 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090080K21, full insert sequence	NA	coding protein	psRNATarget
AK288474.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1185   UCAACGGCGUCAUACAUUAA   1204 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090038A02, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:1565   UCAACGGCGUCAUACAUUAA   1584 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||=|||*||||||||| targets:3228   UCAACGGCGUCAUACAUUAA   3247 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
AK288883.1	ncRNA:20   AGUUGCUGCAAUAUGUAAUU   1   ||||||*|||*||||||||| targets:1094   UCAACGUCGUCAUACAUUAA   1113 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget