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BaseInfo

ncRNA ID	novel_osa_miR1290
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3300000-3300091 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1298758;SRR1555751;SRR2857732;SRR3123646;SRR1556014;SRR3123650;SRR1556018;SRR1300837;SRR1738228;SRR1738239
Length	20
Mature sequence(if miRNA)	73 - UGAAGUGUUUGGGGGAACUC - 92
Stem-loop(if miRNA)	--      U              C          ---UUUC     CA   GUUCCU CCAAGCACUUCACA AGAGCUUUUA       UCUCA  U   |||||| |||||||||||||| ||||||||||       |||||  C   CAAGGG GGUUUGUGAAGUGU UUUCGAAGAU       AGAGU  G CU      -              -          UAAUUCA     UA
Stem-loop sequence	GUUCCUUCCAAGCACUUCACACAGAGCUUUUAUUUCUCUCACAUCGAUUGAGAACUUAAUUAGAAGCUUUUGUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111395.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||||||||||||||| targets:318   GAGUUCCCCCAAACACUUCA   337 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-182-D04, full insert sequence	NA	coding protein	psRNATarget
XM_015775300.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||||||||||||||| targets:322   GAGUUCCCCCAAACACUUCA   341 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331934), mRNA	low affinity sulfate transporter 3(LOC4331934)	coding protein	psRNATarget
AK067353.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:112   GAGUUCACCCAAACACUUCA   131 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013100L12, full insert sequence	NA	coding protein	psRNATarget
XM_015775294.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:529   GAGUUCACCCAAACACUUCA   548 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X3, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775293.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:2647   GAGUUCACCCAAACACUUCA   2666 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X2, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775292.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:2776   GAGUUCACCCAAACACUUCA   2795 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X1, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget